RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 KCNMB2Q9Y691 235 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 SPTBN4Q9H254 2564 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 A0A0J9YW62 118 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 PINLYPA6NC86 204 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 NPIPA2E9PIF3 369 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 NPIPA3F8WFD2 350 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 KHDRBS3O75525 346 aaKnown RBP9.44□□□□□ -0.9
CLN3-248ENST00000636355 AQP8O94778 261 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 ATE1O95260 518 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 HLA-DPB1P04440 258 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 CTLA4P16410 223 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 ZNF708P17019 499 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 ENPP1P22413 925 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 GADD45AP24522 165 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 FGF9P31371 208 aaPredicted RBP9.44□□□□□ -0.9
CLN3-248ENST00000636355 PTGS2P35354 604 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 EIF2S3P41091 472 aaKnown RBP9.44□□□□□ -0.9
CLN3-248ENST00000636355 TGM4P49221 684 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 BIDP55957 195 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 RPS3AP61247 264 aaKnown RBP9.44□□□□□ -0.9
CLN3-248ENST00000636355 ZNF85Q03923 595 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 C19orf57Q0VDD7 668 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 FOXC1Q12948 553 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 LSAMPQ13449 338 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 MELKQ14680 651 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 SLC17A1Q14916 467 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 HIST3H3Q16695 136 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 PCK2Q16822 640 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 OR2G6Q5TZ20 316 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 TRILQ7L0X0 811 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 VASH1Q7L8A9 365 aaPredicted RBP9.44□□□□□ -0.9
CLN3-248ENST00000636355 FAM220AQ7Z4H9 259 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 LHFPL3Q86UP9 236 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 MEIOBQ8N635 442 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 TMEM251Q8N6I4 163 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 FDCSPQ8NFU4 85 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 SLC26A10Q8NG04 563 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 OR5M1Q8NGP8 315 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 OTOSQ8NHW6 89 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 RPS4Y2Q8TD47 263 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 SPRYD4Q8WW59 207 aaPredicted RBP9.44□□□□□ -0.9
CLN3-248ENST00000636355 THRSPQ92748 146 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 RBP7Q96R05 134 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 TTYH2Q9BSA4 534 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.44□□□□□ -0.9
CLN3-248ENST00000636355 SSR3Q9UNL2 185 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 B9D1Q9UPM9 204 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 MED12Q93074 2177 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 APC2O95996 2303 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 ACACAQ13085 2346 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 DCHS1Q96JQ0 3298 aa9.44□□□□□ -0.9
CLN3-248ENST00000636355 IGKV3D-15A0A087WSY6 115 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 A0A1W2PPW3 197 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 DCDC2BA2VCK2 349 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 H7C1C5 153 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 DCTN6O00399 190 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 EIF1AYO14602 144 aaKnown RBP9.43□□□□□ -0.9
CLN3-248ENST00000636355 GPR171O14626 319 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 TNFSF11O14788 317 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 SMAD9O15198 467 aaKnown RBP9.43□□□□□ -0.9
CLN3-248ENST00000636355 EFSO43281 561 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 PLPP2O43688 288 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 GPRIN2O60269 458 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 SELENOFO60613 162 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 SLC16A7O60669 478 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 TRAPPC6AO75865 159 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 MRPL3P09001 348 aaKnown RBP9.43□□□□□ -0.9
CLN3-248ENST00000636355 TACSTD2P09758 323 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 HLA-DOBP13765 273 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 PCSK6P29122 969 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 PYCR1P32322 319 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 NAA10P41227 235 aaPredicted RBP9.43□□□□□ -0.9
CLN3-248ENST00000636355 MAGEA5P43359 124 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 ENTPD1P49961 510 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 LHX2P50458 406 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 GBX2P52951 348 aaPredicted RBP9.43□□□□□ -0.9
CLN3-248ENST00000636355 SUCLG1P53597 346 aaKnown RBP9.43□□□□□ -0.9
CLN3-248ENST00000636355 UCNP55089 124 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 CARD18P57730 90 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 CLRN1P58418 232 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 LCN6P62502 163 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 PPIAP62937 165 aaKnown RBP9.43□□□□□ -0.9
CLN3-248ENST00000636355 FOXK1P85037 733 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 ROM1Q03395 351 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 AQP6Q13520 282 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 STK11Q15831 433 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 WIPI1Q5MNZ9 446 aaPredicted RBP9.43□□□□□ -0.9
CLN3-248ENST00000636355 C10orf128Q5T292 105 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 ZNF684Q5T5D7 378 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 LIPKQ5VXJ0 399 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 RHOUQ7L0Q8 258 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 YRDCQ86U90 279 aaKnown RBP9.43□□□□□ -0.9
CLN3-248ENST00000636355 GPAT4Q86UL3 456 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 GLB1L2Q8IW92 636 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 MS4A15Q8N5U1 240 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 OR9K2Q8NGE7 335 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 OR10D3Q8NH80 312 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 NEIL3Q8TAT5 605 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 DYNC2LI1Q8TCX1 351 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 SNX33Q8WV41 574 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms