RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 TBC1D3KA0A087X1G2 549 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 TBC1D3BA6NDS4 549 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 TBC1D3FA6NER0 549 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 OR2W5A6NFC9 320 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 GLOD5A6NK44 160 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 TTLL8A6PVC2 850 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 SRPX2O60687 465 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 LILRB5O75023 590 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF432O94892 652 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ZFPL1O95159 310 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 FARS2O95363 451 aaKnown RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ZIC2O95409 532 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 CD74P04233 296 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 CTSLP07711 333 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 TACSTD2P09758 323 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ERGP11308 486 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF44P15621 663 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF14P17017 642 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 RCC1P18754 421 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 SDHAP31040 664 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 NAA10P41227 235 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 PPT1P50897 306 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 EEF1A1P68104 462 aaKnown RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 DHRS2Q13268 280 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 TDGQ13569 410 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 TOMM20Q15388 145 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 OR1Q1Q15612 314 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 HMGN3Q15651 99 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ALG11Q2TAA5 492 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 GFOD2Q3B7J2 385 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 LRRC37A5PQ49AS3 106 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 BEX5Q5H9J7 111 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 SLC35D3Q5M8T2 416 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 TBC1D3GQ6DHY5 549 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ZCCHC12Q6PEW1 402 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 FIP1L1Q6UN15 594 aaKnown RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 WDR88Q6ZMY6 472 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 MAMSTRQ6ZN01 415 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 C11orf96Q7Z7L8 435 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 TMEM229BQ8NBD8 167 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 OR4K14Q8NGD5 310 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 TFGQ92734 400 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 WNT2BQ93097 391 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ZBTB8AQ96BR9 441 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 SAT2Q96F10 170 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 C14orf79Q96F83 325 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ZDHHC12Q96GR4 267 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 LINC00615Q96LM1 132 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 OPA3Q9H6K4 179 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ACKR4Q9NPB9 350 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF107Q9UII5 783 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 FBXL21Q9UKT6 434 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 COL4A3Q01955 1670 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 TRAV27A0A087WT01 109 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 TEX13DA0A0J9YY54 714 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 FEZF1A0PJY2 475 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 EIF1AYO14602 144 aaKnown RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 CDC40O60508 579 aaKnown RBP eCLIP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 CTAG2O75638 210 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 RAB3DO95716 219 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ELFN1P0C7U0 828 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 TMIGD3P0DMS9 266 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 CFPP27918 469 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 EIF1AXP47813 144 aaKnown RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 DIO1P49895 249 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 CAV2P51636 162 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 SRSF3P84103 164 aaKnown RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ATXN7L3Q14CW9 347 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 STPG1Q5TH74 334 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 SLC48A1Q6P1K1 146 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 FAM220AQ7Z4H9 259 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 GALNT16Q8N428 558 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 C2orf73Q8N5S3 287 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 AMER3Q8N944 861 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 OR52E2Q8NGJ4 325 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 OR51A7Q8NH64 312 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF417Q8TAU3 575 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 THRSPQ92748 146 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 IRF7Q92985 503 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 HIST1H2BAQ96A08 127 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 CDC6Q99741 560 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 SLCO5A1Q9H2Y9 848 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 C2orf42Q9NWW7 574 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 TREM2Q9NZC2 230 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 RPH3AQ9Y2J0 694 aaPredicted RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 TCF20Q9UGU0 1960 aaKnown RBP9.85□□□□□ -0.83
UPF3A-212ENST00000619079 OBSL1O75147 1896 aa9.85□□□□□ -0.83
UPF3A-212ENST00000619079 NARSO43776 548 aaKnown RBP9.84□□□□□ -0.83
UPF3A-212ENST00000619079 WNT11O96014 354 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 HLA-AP01891 365 aaKnown RBP9.84□□□□□ -0.83
UPF3A-212ENST00000619079 DBIP07108 87 aaKnown RBP9.84□□□□□ -0.83
UPF3A-212ENST00000619079 APEHP13798 732 aaKnown RBP9.84□□□□□ -0.83
UPF3A-212ENST00000619079 PTGER1P34995 402 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 CAPZA1P52907 286 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 ATP1B3P54709 279 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 RAB2AP61019 212 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 DEFA6Q01524 100 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 NKPD1Q17RQ9 610 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 UNQ6126/PRO20091Q6UXV3 157 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 LRRTM1Q86UE6 522 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms