RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 LCE1FQ5T754 118 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 ANXA8L1Q5VT79 327 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 AADACL4Q5VUY2 407 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 UGT2A3Q6UWM9 527 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 TMPRSS11FQ6ZWK6 438 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 YRDCQ86U90 279 aaKnown RBP3.66□□□□□ -1.82
LINC00540-201ENST00000611481 PLD3Q8IV08 490 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 PSTKQ8IV42 348 aaKnown RBP3.66□□□□□ -1.82
LINC00540-201ENST00000611481 NOA1Q8NC60 698 aaKnown RBP3.66□□□□□ -1.82
LINC00540-201ENST00000611481 CSNK2A3Q8NEV1 391 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 OR52J3Q8NH60 311 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 OR4A16Q8NH70 328 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 SLC26A7Q8TE54 656 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 PAQR8Q8TEZ7 354 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 ELMO1Q92556 727 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 GGHQ92820 318 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 PHF21AQ96BD5 680 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 ULK4Q96C45 1275 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 ZNF597Q96LX8 424 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 ZNF583Q96ND8 569 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 ZNF582Q96NG8 517 aaPredicted RBP3.66□□□□□ -1.82
LINC00540-201ENST00000611481 OR1F2PQ96R84 312 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 TSG101Q99816 390 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 DHRS9Q9BPW9 319 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 BCL7BQ9BQE9 202 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 LMF2Q9BU23 707 aaKnown RBP3.66□□□□□ -1.82
LINC00540-201ENST00000611481 SNRNP25Q9BV90 132 aaKnown RBP3.66□□□□□ -1.82
LINC00540-201ENST00000611481 KCNN2Q9H2S1 579 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 FAM96AQ9H5X1 160 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 WDR76Q9H967 626 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 ACTR8Q9H981 624 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 ANKHQ9HCJ1 492 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 PNO1Q9NRX1 252 aaKnown RBP3.66□□□□□ -1.82
LINC00540-201ENST00000611481 UTP6Q9NYH9 597 aaKnown RBP3.66□□□□□ -1.82
LINC00540-201ENST00000611481 RCC2Q9P258 522 aaKnown RBP3.66□□□□□ -1.82
LINC00540-201ENST00000611481 RHCGQ9UBD6 479 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 CHRNA9Q9UGM1 479 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 IL20RAQ9UHF4 553 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 PCYOX1Q9UHG3 505 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 CRLS1Q9UJA2 301 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 POU2F3Q9UKI9 436 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 CLEC4AQ9UMR7 237 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 AP4B1Q9Y6B7 739 aa3.66□□□□□ -1.82
LINC00540-201ENST00000611481 STARD9Q9P2P6 4700 aa3.65□□□□□ -1.82
LINC00540-201ENST00000611481 TRAV24A0A0B4J272 114 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 A0A0U1RRA0 63 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 SERTM2A0A1B0GWG4 89 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 A0A1W2PPK0 400 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 SLC22A20A6NK97 555 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 ANKRD30BLA7E2S9 258 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 KIF2AO00139 706 aaPredicted RBP3.65□□□□□ -1.83
LINC00540-201ENST00000611481 ABCD4O14678 606 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 LIN7AO14910 233 aaPredicted RBP3.65□□□□□ -1.83
LINC00540-201ENST00000611481 SPINT2O43291 252 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 KDM4BO94953 1096 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 STAMBPO95630 424 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 AGTP01019 485 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 MSMBP08118 114 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 RRASP10301 218 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 CMPK1P30085 196 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 PPP2R1BP30154 601 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 FCGR2BP31994 310 aaPredicted RBP3.65□□□□□ -1.83
LINC00540-201ENST00000611481 CHI3L1P36222 383 aaPredicted RBP3.65□□□□□ -1.83
LINC00540-201ENST00000611481 APOBEC1P41238 236 aaKnown RBP3.65□□□□□ -1.83
LINC00540-201ENST00000611481 SLC1A3P43003 542 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 HCAR3P49019 387 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 STARP49675 285 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 RAG2P55895 527 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 CHRNB3Q05901 458 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 ZP4Q12836 540 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 ILF2Q12905 390 aaKnown RBP3.65□□□□□ -1.83
LINC00540-201ENST00000611481 GRB7Q14451 532 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 SLC9A3R2Q15599 337 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 TSC22D1Q15714 1073 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 TAB1Q15750 504 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 NPTX1Q15818 432 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 DECR1Q16698 335 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 ANKRD55Q3KP44 614 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 CEP85LQ5SZL2 805 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 FRG2Q64ET8 278 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 ZFAND6Q6FIF0 208 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 FAM159AQ6UWV7 190 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 HSDL2Q6YN16 418 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 TMPRSS11BQ86T26 416 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 DCUN1D3Q8IWE4 304 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 STHQ8IWL8 128 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 PIANPQ8IYJ0 282 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 SLC25A41Q8N5S1 370 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 TRIM58Q8NG06 486 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 OR2A1Q8NGT9 310 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 OR4F5Q8NH21 305 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 NANPQ8TBE9 248 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 CHPT1Q8WUD6 406 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 PEX13Q92968 403 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 RASD2Q96D21 266 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 SLC41A3Q96GZ6 507 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 PEBP4Q96S96 227 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 COPS8Q99627 209 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 MRPL13Q9BYD1 178 aaKnown RBP3.65□□□□□ -1.83
LINC00540-201ENST00000611481 DDX31Q9H8H2 851 aaKnown RBP3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms