RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 CGREF1Q99674 301 aa11.28□□□□□ -0.6
RPS28-204ENST00000602140 RACGAP1Q9H0H5 632 aa11.28□□□□□ -0.6
RPS28-204ENST00000602140 RNF121Q9H920 327 aa11.28□□□□□ -0.6
RPS28-204ENST00000602140 LPAR2Q9HBW0 351 aa11.28□□□□□ -0.6
RPS28-204ENST00000602140 ZNF275Q9NSD4 429 aaPredicted RBP11.28□□□□□ -0.6
RPS28-204ENST00000602140 METRNQ9UJH8 293 aa11.28□□□□□ -0.6
RPS28-204ENST00000602140 ZNF346Q9UL40 294 aaKnown RBP11.28□□□□□ -0.6
RPS28-204ENST00000602140 SLC7A7Q9UM01 511 aa11.28□□□□□ -0.6
RPS28-204ENST00000602140 NDUFAF1Q9Y375 327 aa11.28□□□□□ -0.6
RPS28-204ENST00000602140 TRAPPC13A5PLN9 417 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 FAM157AC9JC47 383 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 ANGPT2O15123 496 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 PPIHO43447 177 aaKnown RBP11.27□□□□□ -0.61
RPS28-204ENST00000602140 FARS2O95363 451 aaKnown RBP11.27□□□□□ -0.61
RPS28-204ENST00000602140 BCL10O95999 233 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 CLPTM1O96005 669 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 HIST1H2ABP04908 130 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 QDPRP09417 244 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 ASAH2BP0C7U1 165 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 PGA4P0DJD7 388 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 PGA3P0DJD8 388 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 UMPSP11172 480 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 CCL2P13500 99 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 CD247P20963 164 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 MAGEB1P43366 347 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 TMEM33P57088 247 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 NKPD1Q17RQ9 610 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 RGS7BPQ6MZT1 257 aaPredicted RBP11.27□□□□□ -0.61
RPS28-204ENST00000602140 HIST3H2AQ7L7L0 130 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 PATL1Q86TB9 770 aaKnown RBP11.27□□□□□ -0.61
RPS28-204ENST00000602140 RETREG3Q86VR2 466 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 PAQR4Q8N4S7 273 aaPredicted RBP11.27□□□□□ -0.61
RPS28-204ENST00000602140 DPP10Q8N608 796 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 OR4K5Q8NGD3 323 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 HIST1H2ACQ93077 130 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 TMEM186Q96B77 213 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 THOC1Q96FV9 657 aaKnown RBP11.27□□□□□ -0.61
RPS28-204ENST00000602140 OR51B6Q9H340 312 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 OCEL1Q9H607 264 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 ZNF385DQ9H6B1 395 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 KAT8Q9H7Z6 458 aaKnown RBP11.27□□□□□ -0.61
RPS28-204ENST00000602140 CDH20Q9HBT6 801 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 HIF1ANQ9NWT6 349 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 TREM2Q9NZC2 230 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 TAAR3PQ9P1P4 343 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 ZNF229Q9UJW7 825 aa11.27□□□□□ -0.61
RPS28-204ENST00000602140 SLC22A23A1A5C7 686 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 BLOC1S5-TXNDC5H3BN57 136 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 RP2O75695 350 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 TFP02787 698 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 MSMBP08118 114 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 PCGF2P35227 344 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 CLRN1P58418 232 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 SELENOVP59797 346 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 ERVS71-1P61550 626 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 MRPS11P82912 194 aaKnown RBP11.26□□□□□ -0.61
RPS28-204ENST00000602140 NFYCQ13952 458 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 TMEM53Q6P2H8 277 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 NANOGNBQ7Z5D8 188 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 SLC30A8Q8IWU4 369 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 OR10A6Q8NH74 314 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 SYNPRQ8TBG9 265 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 SLC26A7Q8TE54 656 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 TAMM41Q96BW9 452 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 MPP4Q96JB8 637 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 ATP6V1G3Q96LB4 118 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 TSPAN32Q96QS1 320 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 ZNF426Q9BUY5 554 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 ZNF416Q9BWM5 594 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 SLC19A3Q9BZV2 496 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 METTL17Q9H7H0 456 aaPredicted RBP11.26□□□□□ -0.61
RPS28-204ENST00000602140 GPR160Q9UJ42 338 aa11.26□□□□□ -0.61
RPS28-204ENST00000602140 C17orf100A8MU93 164 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 CDC14BO60729 498 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 PTHP01270 115 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 IGHG1P01857 330 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 LCKP06239 509 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 GAAP10253 952 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 ZNF250P15622 560 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 KLF3P57682 345 aaPredicted RBP11.25□□□□□ -0.61
RPS28-204ENST00000602140 CCL8P80075 99 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 MYBPC1Q00872 1141 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 RUNX1T1Q06455 604 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 TBC1D28Q2M2D7 210 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 SLC36A2Q495M3 483 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 TTMPQ5BVD1 217 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 INTS11Q5TA45 600 aaKnown RBP11.25□□□□□ -0.61
RPS28-204ENST00000602140 TMEM154Q6P9G4 183 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 SLC16A14Q7RTX9 510 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 DPPA2Q7Z7J5 298 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 LRRC18Q8N456 261 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.25□□□□□ -0.61
RPS28-204ENST00000602140 SYT14Q8NB59 555 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 ICA1LQ8NDH6 482 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 C11orf40Q8WZ69 217 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 MCHR2Q969V1 340 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 LRRC37BQ96QE4 947 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 ZNF347Q96SE7 839 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 PRSS27Q9BQR3 290 aa11.25□□□□□ -0.61
RPS28-204ENST00000602140 PCDHAC1Q9H158 963 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms