RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PAQR8Q8TEZ7 354 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 PHPT1Q9NRX4 125 aaPredicted RBP16.67■□□□□ 0.26
UPF1-210ENST00000600689 MED9Q9NWA0 146 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 ATPIF1Q9UII2 106 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 ICAM5Q9UMF0 924 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 PCDHB10Q9UN67 800 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 ENTPD2Q9Y5L3 495 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 EEF1E1-BLOC1S5C9J1V9 151 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 SULT1B1O43704 296 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 FADS1O60427 444 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 IGKV1D-16P01601 117 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 NAT2P11245 290 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 YAF2Q8IY57 180 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 MYADMQ96S97 322 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 MTIF3Q9H2K0 278 aaKnown RBP16.67■□□□□ 0.26
UPF1-210ENST00000600689 SRMSQ9H3Y6 488 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 TBC1D29Q9UFV1 150 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 LAMP5Q9UJQ1 280 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 TMEM82A0PJX8 343 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 FITM1A5D6W6 292 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 ZNF749O43361 778 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 CTAG2O75638 210 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 RAB3DO95716 219 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 WDPCPO95876 746 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 PVALBP20472 110 aaPredicted RBP16.66■□□□□ 0.26
UPF1-210ENST00000600689 ACAA2P42765 397 aaKnown RBP16.66■□□□□ 0.26
UPF1-210ENST00000600689 ERV3-1Q14264 604 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 DEFB110Q30KQ9 67 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 NKAIN2Q5VXU1 208 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 CMSS1Q9BQ75 279 aaKnown RBP16.66■□□□□ 0.26
UPF1-210ENST00000600689 COMMD9Q9P000 198 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 CGGBP1Q9UFW8 167 aaPredicted RBP16.66■□□□□ 0.26
UPF1-210ENST00000600689 SLC22A13Q9Y226 551 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 BRINP1O60477 761 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 ZNF254O75437 659 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 ITGA5P08648 1049 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 CNR1P21554 472 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 BDKRB2P30411 391 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 DLSTP36957 453 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 CAPZA1P52907 286 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 ARFIP1P53367 373 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 ATP1B3P54709 279 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 SRSF3P84103 164 aaKnown RBP16.66■□□□□ 0.26
UPF1-210ENST00000600689 SGCGQ13326 291 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 MANEAQ5SRI9 462 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 TMEM17Q86X19 198 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 OR14C36Q8NHC7 312 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 TEX101Q9BY14 249 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 RSPH9Q9H1X1 276 aaPredicted RBP16.66■□□□□ 0.26
UPF1-210ENST00000600689 DTX4Q9Y2E6 619 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 RFPL4AA6NLU0 287 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 OR2AT4A6NND4 320 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 RFPL4AL1F8VTS6 287 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 XRCC3O43542 346 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 CBR1P16152 277 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 PSMD4P55036 377 aaKnown RBP16.66■□□□□ 0.26
UPF1-210ENST00000600689 CTXN1P60606 82 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 SKP1P63208 163 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 FLI1Q01543 452 aaPredicted RBP16.66■□□□□ 0.26
UPF1-210ENST00000600689 SHHQ15465 462 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 CEBPEQ15744 281 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 C2orf76Q3KRA6 126 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 LY6G6FQ5SQ64 297 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 LRRTM1Q86UE6 522 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 C3orf49Q96BT1 292 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 SPACA7Q96KW9 195 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 AMELYQ99218 206 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 DNTTIP1Q9H147 329 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 DNAJB12Q9NXW2 375 aaKnown RBP16.66■□□□□ 0.26
UPF1-210ENST00000600689 CYB5R1Q9UHQ9 305 aa16.66■□□□□ 0.26
UPF1-210ENST00000600689 C13orf42A0A1B0GVH6 325 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 DCDC2BA2VCK2 349 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 TMEM200CA6NKL6 621 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 SIGLEC6O43699 453 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 CEACAM5P06731 702 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 CALCBP10092 127 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 VAMP1P23763 118 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 AVPR2P30518 371 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 KCNJ3P48549 501 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 FGL1Q08830 312 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 ZCCHC12Q6PEW1 402 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 OR6N1Q8NGY5 312 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 ESRP2Q9H6T0 727 aaKnown RBP16.65■□□□□ 0.26
UPF1-210ENST00000600689 ZNF275Q9NSD4 429 aaPredicted RBP16.65■□□□□ 0.26
UPF1-210ENST00000600689 RASL12Q9NYN1 266 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 LRIT1Q9P2V4 623 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 SERTAD3Q9UJW9 196 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 MPDZO75970 2070 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 HLA-AP01891 365 aaKnown RBP16.65■□□□□ 0.26
UPF1-210ENST00000600689 CSF1P09603 554 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 ILF3Q12906 894 aaKnown RBP eCLIP16.65■□□□□ 0.26
UPF1-210ENST00000600689 NR0B2Q15466 257 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 PRAMEF17Q5VTA0 474 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 ZNF425Q6IV72 752 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 TMEM71Q6P5X7 295 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 LDLRAD3Q86YD5 345 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 CCDC74AQ96AQ1 378 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 FGF22Q9HCT0 170 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 C14orf105Q9NVL8 296 aa16.65■□□□□ 0.26
UPF1-210ENST00000600689 F8W036 122 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms