RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 RAP2AP10114 183 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 HMGA2P52926 109 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 FMODQ06828 376 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 FLOT2Q14254 428 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 TAF11Q15544 211 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 ZNF672Q499Z4 452 aaPredicted RBP13.26□□□□□ -0.29
LIG1-219ENST00000600055 PGBD2Q6P3X8 592 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 ZNF627Q7L945 461 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 HDDC2Q7Z4H3 204 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 MYPOPQ86VE0 399 aaPredicted RBP13.26□□□□□ -0.29
LIG1-219ENST00000600055 SPATA24Q86W54 205 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 AQP12AQ8IXF9 295 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 NMD3Q96D46 503 aaKnown RBP13.26□□□□□ -0.29
LIG1-219ENST00000600055 Q96M85 177 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 SLC38A2Q96QD8 506 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 KCNK17Q96T54 332 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 CHID1Q9BWS9 393 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 NOX3Q9HBY0 568 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 KRCC1Q9NPI7 259 aaPredicted RBP13.26□□□□□ -0.29
LIG1-219ENST00000600055 ZNF224Q9NZL3 707 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 SLC7A8Q9UHI5 535 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 EDARQ9UNE0 448 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 DHRS12A0PJE2 317 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 CENPBD1B2RD01 187 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 H7C1C5 153 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 KRT36O76013 467 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 NDUFB2O95178 105 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 PATE4P0C8F1 98 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 CD79AP11912 226 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 ART1P52961 327 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 CDH11P55287 796 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 LCN6P62502 163 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 PIGFQ07326 219 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 CD47Q08722 323 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 C1QTNF12Q5T7M4 302 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 OR2T5Q6IEZ7 315 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 SLC22A25Q6T423 547 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 B3GLCTQ6Y288 498 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 C20orf204Q6ZNR8 217 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 FAM122BQ7Z309 247 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 MDP1Q86V88 176 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 SKA3Q8IX90 412 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 ZNF611Q8N823 705 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 OR9Q2Q8NGE9 314 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 OR2T29Q8NH02 315 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 FGFBP3Q8TAT2 258 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 NSMAFQ92636 917 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 CCL19Q99731 98 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 TMEM38BQ9NVV0 291 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 B3GNT2Q9NY97 397 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 STX18Q9P2W9 335 aaKnown RBP13.25□□□□□ -0.29
LIG1-219ENST00000600055 CRNNQ9UBG3 495 aaPredicted RBP13.25□□□□□ -0.29
LIG1-219ENST00000600055 MGAT4BQ9UQ53 548 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 U3KQV3 271 aa13.25□□□□□ -0.29
LIG1-219ENST00000600055 E7EQL1 145 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 ATP6V1G2-DDX39BF2Z307 99 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 ARHGEF9O43307 516 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 IGLV1-44P01699 117 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 CECR9P0C854 216 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 CBR1P16152 277 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 FPR3P25089 353 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 CDAP32320 146 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 GSSP48637 474 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 IDH3GP51553 393 aaPredicted RBP13.24□□□□□ -0.29
LIG1-219ENST00000600055 ZNF133P52736 654 aaPredicted RBP13.24□□□□□ -0.29
LIG1-219ENST00000600055 NPRL3Q12980 569 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 TESK1Q15569 626 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 DEFB113Q30KQ7 82 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 MESTQ5EB52 335 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 C10orf128Q5T292 105 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 C1orf94Q6P1W5 598 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 SLC25A47Q6Q0C1 308 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 SLC22A24Q8N4F4 322 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 ARIH2OSQ8N7S6 290 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 GNPDA2Q8TDQ7 276 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 POP5Q969H6 163 aaKnown RBP13.24□□□□□ -0.29
LIG1-219ENST00000600055 FBXW5Q969U6 566 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 RASD2Q96D21 266 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 MBD6Q96DN6 1003 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 RADILQ96JH8 1075 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 SH3GL3Q99963 347 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 ALG12Q9BV10 488 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 CISD1Q9NZ45 108 aaKnown RBP13.24□□□□□ -0.29
LIG1-219ENST00000600055 GRHPRQ9UBQ7 328 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 POU2F3Q9UKI9 436 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 MOKQ9UQ07 419 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 SAMHD1Q9Y3Z3 626 aaKnown RBP13.24□□□□□ -0.29
LIG1-219ENST00000600055 IER3IP1Q9Y5U9 82 aa13.24□□□□□ -0.29
LIG1-219ENST00000600055 SPG11Q96JI7 2443 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 AKAP6Q13023 2319 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 TEX13CA0A0J9YWL9 993 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 TCRBV3S1A0A5B6 114 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 A6NIZ1 184 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 IMPA2O14732 288 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 CCNB2O95067 398 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 CST1P01037 141 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 GASTP01350 101 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 IGKV3-15P01624 115 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 SOD3P08294 240 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 IFNGR2P38484 337 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms