RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 PDLIM1O00151 329 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 OR2T1O43869 369 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 OR10H3O60404 316 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 IFI30P13284 250 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 ANXA8P13928 327 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 ZNF26P17031 533 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 MAKP20794 623 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 AGTR1P30556 359 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 IFNGR2P38484 337 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 NR4A2P43354 598 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 GSSP48637 474 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 SPOCK1Q08629 439 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 TRIP10Q15642 601 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 ZNF74Q16587 644 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 TMEM176BQ3YBM2 270 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 LPCAT4Q643R3 524 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 CD300LDQ6UXZ3 194 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 FBXL14Q8N1E6 418 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 MUC15Q8N387 334 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 ATP6V1C2Q8NEY4 427 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 MFSD8Q8NHS3 518 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 PIGXQ8TBF5 258 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 GNPDA2Q8TDQ7 276 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 HSD17B8Q92506 261 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 KISS1RQ969F8 398 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 BPIFA2Q96DR5 249 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 KLHL15Q96M94 604 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 SLC29A1Q99808 456 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 RASSF4Q9H2L5 321 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 TMEM185BQ9H7F4 350 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 METTL17Q9H7H0 456 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 COQ10BQ9H8M1 238 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 USE1Q9NZ43 259 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 TMEFF2Q9UIK5 374 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 METRNQ9UJH8 293 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 TRAPPC4Q9Y296 219 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 TMEM5Q9Y2B1 443 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 PCDHGB1Q9Y5G3 927 aa12.15□□□□□ -0.46
SHKBP1-218ENST00000598907 LIPT2A6NK58 231 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 VWC2LB2RUY7 222 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 E7EQL1 145 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 KPNA4O00629 521 aaPredicted RBP12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 SOCS2O14508 198 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 OR7A10O76100 309 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 AHSA1O95433 338 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 PMS2P2O95744 297 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 ADAP00813 363 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 MT-ATP6P00846 226 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 OPN1LWP04000 364 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 TSPAN19P0C672 248 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 FPR3P25089 353 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 PEX2P28328 305 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 RPS5P46782 204 aaKnown RBP12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 PDLIM4P50479 330 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 DAPP51397 102 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 EFNA4P52798 201 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 TSPAN31Q12999 210 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 FHL1Q13642 323 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 SFRP5Q5T4F7 317 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 FAM69AQ5T7M9 428 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 KDM4DQ6B0I6 523 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 TMPPEQ6ZT21 453 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 ESPNLQ6ZVH7 1005 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 CDK20Q8IZL9 346 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 GABRG1Q8N1C3 465 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 CBR4Q8N4T8 237 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 AQP11Q8NBQ7 271 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 EME1Q96AY2 570 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 SGTBQ96EQ0 304 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 FAM46AQ96IP4 442 aaKnown RBP12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 MOGAT1Q96PD6 335 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 NIPSNAP1Q9BPW8 284 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 SMURF2Q9HAU4 748 aa12.14□□□□□ -0.47
SHKBP1-218ENST00000598907 A0A1W2PNR3 127 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 LRP5LA4QPB2 252 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 LRRN3E7EW58 273 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 H7C417 338 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 CDC42EP2O14613 210 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 DNPH1O43598 174 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 PTP4A3O75365 173 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 SYNGR4O95473 234 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 CH25HO95992 272 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 HPRP00739 348 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 ALPLP05186 524 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 ASAH2BP0C7U1 165 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 TFPIP10646 304 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 FUT1P19526 365 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 SFTPDP35247 375 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 ALDH3A2P51648 485 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 COX10Q12887 443 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 DAG1Q14118 895 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 P2RY6Q15077 328 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 ZNF239Q16600 458 aaKnown RBP12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 AWAT1Q58HT5 328 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 OTUD3Q5T2D3 398 aaPredicted RBP12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 SLC22A25Q6T423 547 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 TREML4Q6UXN2 200 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 ZBTB49Q6ZSB9 765 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 PACRGLQ8N7B6 248 aa12.13□□□□□ -0.47
SHKBP1-218ENST00000598907 DNAJC9Q8WXX5 260 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms