RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 CCDC90BQ9GZT6 254 aa13.73□□□□□ -0.21
UPF1-206ENST00000598471 NUAK2Q9H093 628 aa13.73□□□□□ -0.21
UPF1-206ENST00000598471 RACGAP1Q9H0H5 632 aa13.73□□□□□ -0.21
UPF1-206ENST00000598471 RERGLQ9H628 205 aa13.73□□□□□ -0.21
UPF1-206ENST00000598471 CALHM2Q9HA72 323 aa13.73□□□□□ -0.21
UPF1-206ENST00000598471 BCO1Q9HAY6 547 aa13.73□□□□□ -0.21
UPF1-206ENST00000598471 SRA1Q9HD15 236 aaKnown RBP13.73□□□□□ -0.21
UPF1-206ENST00000598471 VCX3AQ9NNX9 186 aa13.73□□□□□ -0.21
UPF1-206ENST00000598471 B3GAT2Q9NPZ5 323 aa13.73□□□□□ -0.21
UPF1-206ENST00000598471 MRPS18AQ9NVS2 196 aaKnown RBP13.73□□□□□ -0.21
UPF1-206ENST00000598471 HAO2Q9NYQ3 351 aa13.73□□□□□ -0.21
UPF1-206ENST00000598471 NOSIPQ9Y314 301 aaKnown RBP13.73□□□□□ -0.21
UPF1-206ENST00000598471 PCDHGB1Q9Y5G3 927 aa13.73□□□□□ -0.21
UPF1-206ENST00000598471 ZNF407Q9C0G0 2248 aa13.73□□□□□ -0.21
UPF1-206ENST00000598471 CCDC182A6NF36 153 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 TRIM64A6NGJ6 449 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 OR6C65A6NJZ3 312 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 PRRG2O14669 202 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 SLC16A7O60669 478 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 MRPL33O75394 65 aaKnown RBP13.72□□□□□ -0.21
UPF1-206ENST00000598471 KHDRBS3O75525 346 aaKnown RBP13.72□□□□□ -0.21
UPF1-206ENST00000598471 RAB36O95755 333 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 FADS2O95864 444 aaKnown RBP13.72□□□□□ -0.21
UPF1-206ENST00000598471 YES1P07947 543 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 CLUP10909 449 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 GSTT1P30711 240 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 PYCR1P32322 319 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 ZNF773Q6PK81 442 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 PRSS48Q7RTY5 328 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 FGD2Q7Z6J4 655 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 ZBTB46Q86UZ6 589 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 CD163Q86VB7 1156 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 TMEM123Q8N131 208 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 SVOPQ8N4V2 548 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 POMGNT2Q8NAT1 580 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 WNT2BQ93097 391 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 LGALS12Q96DT0 336 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 TMEM80Q96HE8 168 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 GMPPAQ96IJ6 420 aaPredicted RBP13.72□□□□□ -0.21
UPF1-206ENST00000598471 MRPS26Q9BYN8 205 aaKnown RBP13.72□□□□□ -0.21
UPF1-206ENST00000598471 ASF1BQ9NVP2 202 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 FKBP14Q9NWM8 211 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 GLTPQ9NZD2 209 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 B9D1Q9UPM9 204 aa13.72□□□□□ -0.21
UPF1-206ENST00000598471 CD8B2A6NJW9 211 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 ZNF432O94892 652 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 TGM6O95932 706 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 CDK1P06493 297 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 EDN3P14138 238 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 SELENOPP49908 381 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 CDH15P55291 814 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 GLO1Q04760 184 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 ST3GAL4Q11206 333 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 GGTLC2Q14390 218 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 NSUN5P2Q63ZY6 315 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 OR6V1Q8N148 313 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 GPR137CQ8N3F9 429 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 OR51L1Q8NGJ5 315 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 OR51G2Q8NGK0 314 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 KISS1RQ969F8 398 aaPredicted RBP13.71□□□□□ -0.21
UPF1-206ENST00000598471 TMEM54Q969K7 222 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 ZNF775Q96BV0 537 aaPredicted RBP13.71□□□□□ -0.21
UPF1-206ENST00000598471 ZMYND19Q96E35 227 aaPredicted RBP13.71□□□□□ -0.21
UPF1-206ENST00000598471 TSSK2Q96PF2 358 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 CNN2Q99439 309 aaKnown RBP13.71□□□□□ -0.21
UPF1-206ENST00000598471 TM9SF2Q99805 663 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 FGF20Q9NP95 211 aaPredicted RBP13.71□□□□□ -0.21
UPF1-206ENST00000598471 PAK1IP1Q9NWT1 392 aaPredicted RBP13.71□□□□□ -0.21
UPF1-206ENST00000598471 CHCHD3Q9NX63 227 aaKnown RBP13.71□□□□□ -0.21
UPF1-206ENST00000598471 ERVK-18Q9QC07 812 aa13.71□□□□□ -0.21
UPF1-206ENST00000598471 ING1Q9UK53 422 aaPredicted RBP13.71□□□□□ -0.21
UPF1-206ENST00000598471 DNAJC13O75165 2243 aa13.71□□□□□ -0.22
UPF1-206ENST00000598471 IGLV1-36A0A0B4J1U3 117 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 SS18L1O75177 396 aaPredicted RBP13.7□□□□□ -0.22
UPF1-206ENST00000598471 HLA-DQA2P01906 255 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 CTLA4P16410 223 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 MYL12AP19105 171 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 DCKP27707 260 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 ACTC1P68032 377 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 ACTA1P68133 377 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 TUBA4AP68366 448 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 FMODQ06828 376 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 HIST3H3Q16695 136 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 EIF2S3LQ2VIR3 472 aaKnown RBP13.7□□□□□ -0.22
UPF1-206ENST00000598471 PRR30Q53SZ7 412 aaPredicted RBP13.7□□□□□ -0.22
UPF1-206ENST00000598471 C1orf185Q5T7R7 199 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 TMEM154Q6P9G4 183 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 TUSC5Q8IXB3 177 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 C20orf196Q8IYI0 205 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 OR52I1Q8NGK6 324 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 RHNO1Q9BSD3 238 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 ULBP2Q9BZM5 246 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 TP63Q9H3D4 680 aaPredicted RBP13.7□□□□□ -0.22
UPF1-206ENST00000598471 CLEC4AQ9UMR7 237 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 DIMT1Q9UNQ2 313 aaKnown RBP13.7□□□□□ -0.22
UPF1-206ENST00000598471 EXOGQ9Y2C4 368 aaKnown RBP13.7□□□□□ -0.22
UPF1-206ENST00000598471 EXOSC1Q9Y3B2 195 aaKnown RBP13.7□□□□□ -0.22
UPF1-206ENST00000598471 EMC9Q9Y3B6 208 aa13.7□□□□□ -0.22
UPF1-206ENST00000598471 EIF4E1BA6NMX2 242 aaKnown RBP13.69□□□□□ -0.22
UPF1-206ENST00000598471 FAM171A2A8MVW0 826 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms