RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TRAV27A0A087WT01 109 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 EFCAB9A8MZ26 197 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 ATP6V1G2-DDX39BF2Z307 99 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 DHHO43323 396 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 B4GALT1P15291 398 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 ACADSP16219 412 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 ARR3P36575 388 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 GPR4P46093 362 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 NKX6-1P78426 367 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-213ENST00000598355 NAAAQ02083 359 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 FOXD4Q12950 439 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-213ENST00000598355 FAM205BPQ63HN1 556 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 ZNF544Q6NX49 715 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 ZNF813Q6ZN06 617 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 OAFQ86UD1 273 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 MEX3DQ86XN8 651 aaKnown RBP14.03□□□□□ -0.16
TRIM28-213ENST00000598355 WFDC11Q8NEX6 87 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 OR4K5Q8NGD3 323 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 HDAC2Q92769 488 aaKnown RBP14.03□□□□□ -0.16
TRIM28-213ENST00000598355 ZNF347Q96SE7 839 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 GPX7Q96SL4 187 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-213ENST00000598355 DENND2DQ9H6A0 471 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-213ENST00000598355 FAIMQ9NVQ4 179 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 TMEM38BQ9NVV0 291 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 LAMP3Q9UQV4 416 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 SIGLEC7Q9Y286 467 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 POFUT2Q9Y2G5 429 aa14.03□□□□□ -0.16
TRIM28-213ENST00000598355 SH3PXD2BA1X283 911 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 MCIDASD6RGH6 385 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 FABP3P05413 133 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 CELA3BP08861 270 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 ZNF14P17017 642 aaPredicted RBP14.02□□□□□ -0.17
TRIM28-213ENST00000598355 TTKP33981 857 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 FXYD6P3P58550 94 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 RPL27P61353 136 aaKnown RBP14.02□□□□□ -0.17
TRIM28-213ENST00000598355 TRIM25Q14258 630 aaKnown RBP14.02□□□□□ -0.17
TRIM28-213ENST00000598355 FGD3Q5JSP0 725 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 Q5PR19 223 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 FAM122BQ7Z309 247 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 MDP1Q86V88 176 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 MCHR2Q969V1 340 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 ASB9Q96DX5 294 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 FAM46AQ96IP4 442 aaKnown RBP14.02□□□□□ -0.17
TRIM28-213ENST00000598355 TNFRSF13CQ96RJ3 184 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 ALG12Q9BV10 488 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 MOKQ9UQ07 419 aa14.02□□□□□ -0.17
TRIM28-213ENST00000598355 PTP4A3O75365 173 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 PDE5AO76074 875 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 UBOX5O94941 541 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 HLA-HP01893 362 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 QDPRP09417 244 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 NR2C1P13056 603 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 CALCRP30988 508 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 CLRN1P58418 232 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 SMIM11AP58511 58 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 CTXN1P60606 82 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 MS4A2Q01362 244 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 GSG1Q2KHT4 349 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 ZBED5Q49AG3 693 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 CYP2R1Q6VVX0 501 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 ZDHHC21Q8IVQ6 265 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 CDK20Q8IZL9 346 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 DEPDC4Q8N2C3 294 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 SLC22A24Q8N4F4 322 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 OR51A7Q8NH64 312 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 NANOS1Q8WY41 292 aaKnown RBP14.01□□□□□ -0.17
TRIM28-213ENST00000598355 PERPQ96FX8 193 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 TSPAN32Q96QS1 320 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 MAGIXQ9H6Y5 334 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 UGT2A1Q9Y4X1 527 aa14.01□□□□□ -0.17
TRIM28-213ENST00000598355 IGKV1D-43A0A0B4J1Z2 117 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 IGHV2OR16-5A0A0B4J2B6 119 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 ACOT8O14734 319 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 ARHGEF9O43307 516 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 MGRN1O60291 552 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 ENTPD5O75356 428 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 UBL3O95164 117 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 GADD45GO95257 159 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 CRYAAP02489 173 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 CD14P08571 375 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 OR8G3PP0DMU2 310 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 IDH3GP51553 393 aaPredicted RBP14□□□□□ -0.17
TRIM28-213ENST00000598355 HMGA2P52926 109 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 MRPS34P82930 218 aaKnown RBP14□□□□□ -0.17
TRIM28-213ENST00000598355 SPIBQ01892 262 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 AGAP6Q5VW22 663 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 SLC25A47Q6Q0C1 308 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 FOXL2NBQ6ZUU3 175 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 RRM2BQ7LG56 351 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 IGFN1Q86VF2 1251 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 SKA3Q8IX90 412 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 NUP37Q8NFH4 326 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 FGFBP3Q8TAT2 258 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 FNDC8Q8TC99 324 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 POP5Q969H6 163 aaKnown RBP14□□□□□ -0.17
TRIM28-213ENST00000598355 NABP1Q96AH0 204 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 MCUR1Q96AQ8 359 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 SLC7A6OSQ96CW6 309 aaPredicted RBP14□□□□□ -0.17
TRIM28-213ENST00000598355 GPA33Q99795 319 aa14□□□□□ -0.17
TRIM28-213ENST00000598355 CBLN4Q9NTU7 201 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms