RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 SERPINB5P36952 375 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 NAA10P41227 235 aaPredicted RBP2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 NSG1P42857 185 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 FGF8P55075 233 aaPredicted RBP2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 RAB10P61026 200 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 ADARB1P78563 741 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 CKAP4Q07065 602 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 AQP6Q13520 282 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 CLINT1Q14677 625 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 PIGGQ5H8A4 983 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 PRAMEF20Q5VT98 475 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 C9orf135Q5VTT2 229 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 LRRC66Q68CR7 880 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 SLC8B1Q6J4K2 584 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 LCN12Q6JVE5 192 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 C19orf35Q6ZS72 473 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 Q8N9W7 124 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 MDS2Q8NDY4 140 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 CD300LFQ8TDQ1 290 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 GEMIN6Q8WXD5 167 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 TMEM54Q969K7 222 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 EXOSC8Q96B26 276 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 MED8Q96G25 268 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 TGS1Q96RS0 853 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 P2RX4Q99571 388 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 RACGAP1Q9H0H5 632 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 LINC00597Q9H2U6 94 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 STOX2Q9P2F5 926 aaPredicted RBP2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 TRAPPC4Q9Y296 219 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 HEBP2Q9Y5Z4 205 aa2.47□□□□□ -2.01
SMCHD1-209ENST00000583441 TRBV6-6A0A0A6YYG2 114 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 KIR2DL5BA0A0G2JN68 375 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 KIR2DL5BA0A0G2JPC4 375 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 IGHV3-64DA0A0J9YX35 117 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 A0A1B0GVI7 797 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 PRSS37A4D1T9 235 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 FAM166BA8MTA8 275 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 PANO1I0J062 215 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 PES1O00541 588 aaKnown RBP2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 AIM2O14862 343 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 PPP1R2P9O14990 202 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 CLOCKO15516 846 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 FGGP02679 453 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 BGLAPP02818 100 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 PLEKP08567 350 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 PABPC4LP0CB38 370 aaKnown RBP2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 PSG2P11465 335 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 BTCP35070 178 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 NMUP48645 174 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 RORCP51449 518 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 RGS8P57771 180 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 TGM3Q08188 693 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 SASS6Q6UVJ0 657 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 ZNF621Q6ZSS3 439 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 NIPA1Q7RTP0 329 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 KIR2DL5AQ8N109 375 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 GTPBP8Q8N3Z3 284 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 MREGQ8N565 214 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 OR52K2Q8NGK3 314 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 OR1S2Q8NGQ3 325 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 KIR2DL5BQ8NHK3 375 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 LKAAEAR1Q8TD35 194 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 ASB9Q96DX5 294 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 TSSK3Q96PN8 268 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 ATP5SQ99766 215 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 SLC25A39Q9BZJ4 359 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 UGT1A7Q9HAW7 530 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 UGT1A10Q9HAW8 530 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 UGT1A8Q9HAW9 530 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 ZNF160Q9HCG1 818 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 DMAP1Q9NPF5 467 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 ZNF331Q9NQX6 463 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 SAMSN1Q9NSI8 373 aaKnown RBP2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 LSM7Q9UK45 103 aaKnown RBP2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 TP53TG5Q9Y2B4 290 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 GOLT1BQ9Y3E0 138 aa2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 RAI1Q7Z5J4 1906 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP2.46□□□□□ -2.02
SMCHD1-209ENST00000583441 IGKV1D-13A0A0B4J2D9 117 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 SIRPB1O00241 398 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 RAB29O14966 203 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 OR2J3O76001 311 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 H6PDO95479 791 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 SLC25A27O95847 323 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 C6orf47O95873 294 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 IGKV1-13P0DP09 117 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 TOP1P11387 765 aaKnown RBP2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 OMGP23515 440 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 SLC1A1P43005 524 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 SYKP43405 635 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 RFX3P48380 749 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 TMED10P49755 219 aaKnown RBP2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 MNAT1P51948 309 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 PRRX1P54821 245 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 C21orf59P57076 290 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 RPS21P63220 83 aaKnown RBP2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 CCNA1P78396 465 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 HMGCS1Q01581 520 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 TCP10Q12799 353 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 ECH1Q13011 328 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms