RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 KISS1RQ969F8 398 aaPredicted RBP13.57□□□□□ -0.24
SS18-215ENST00000580642 TMEM54Q969K7 222 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 SNRNP40Q96DI7 357 aaKnown RBP13.57□□□□□ -0.24
SS18-215ENST00000580642 ZFP3Q96NJ6 502 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 ZNF385AQ96PM9 386 aaKnown RBP13.57□□□□□ -0.24
SS18-215ENST00000580642 HCAR1Q9BXC0 346 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 LINC00470Q9BZP3 86 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 NUAK2Q9H093 628 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 MARCH7Q9H992 704 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 B3GAT2Q9NPZ5 323 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 CHCHD3Q9NX63 227 aaKnown RBP13.57□□□□□ -0.24
SS18-215ENST00000580642 GLTPQ9NZD2 209 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 EXOSC1Q9Y3B2 195 aaKnown RBP13.57□□□□□ -0.24
SS18-215ENST00000580642 J3QRE1 110 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 SS18L1O75177 396 aaPredicted RBP13.56□□□□□ -0.24
SS18-215ENST00000580642 MRPL33O75394 65 aaKnown RBP13.56□□□□□ -0.24
SS18-215ENST00000580642 SMNDC1O75940 238 aaKnown RBP eCLIP13.56□□□□□ -0.24
SS18-215ENST00000580642 RAB36O95755 333 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 CLPTM1O96005 669 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 IGHA1P01876 353 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 FREM3P0C091 2139 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 SBK2P0C263 348 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 OR2T7P0C7T2 308 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 GSTT1P30711 240 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 ATP6V1E1P36543 226 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 CSNK1A1P48729 337 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 RUNX1T1Q06455 604 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 ACSF3Q4G176 576 aaPredicted RBP13.56□□□□□ -0.24
SS18-215ENST00000580642 C10orf128Q5T292 105 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 LINC01590Q5TEZ4 76 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 B3GNT6Q6ZMB0 384 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 AAED1Q7RTV5 226 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 P4HA3Q7Z4N8 544 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 BCDIN3DQ7Z5W3 292 aaKnown RBP13.56□□□□□ -0.24
SS18-215ENST00000580642 LSRQ86X29 649 aaPredicted RBP13.56□□□□□ -0.24
SS18-215ENST00000580642 BBS1Q8NFJ9 593 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 OR2T27Q8NH04 317 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 FAM57AQ8TBR7 257 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 ABHD3Q8WU67 409 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 LGALS12Q96DT0 336 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 MRPL48Q96GC5 212 aaKnown RBP13.56□□□□□ -0.24
SS18-215ENST00000580642 CRELD1Q96HD1 420 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 CNN2Q99439 309 aaKnown RBP13.56□□□□□ -0.24
SS18-215ENST00000580642 MED20Q9H944 212 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 AMBNQ9NP70 447 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 PAK1IP1Q9NWT1 392 aaPredicted RBP13.56□□□□□ -0.24
SS18-215ENST00000580642 TNFRSF10DQ9UBN6 386 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 KCNG2Q9UJ96 466 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 FOXD3Q9UJU5 478 aaPredicted RBP13.56□□□□□ -0.24
SS18-215ENST00000580642 NOSIPQ9Y314 301 aaKnown RBP13.56□□□□□ -0.24
SS18-215ENST00000580642 TMEM14AQ9Y6G1 99 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 MGAQ8IWI9 3026 aa13.56□□□□□ -0.24
SS18-215ENST00000580642 PRRG2O14669 202 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 SLC16A7O60669 478 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 AQP8O94778 261 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 CNOT4O95628 575 aaKnown RBP13.55□□□□□ -0.24
SS18-215ENST00000580642 SMIM18P0DKX4 95 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 MYL12AP19105 171 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 NR1H2P55055 460 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 HSF2Q03933 536 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 CAMK2DQ13557 499 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 TBCEQ15813 527 aaPredicted RBP13.55□□□□□ -0.24
SS18-215ENST00000580642 NRN1LQ496H8 165 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 TEX30Q5JUR7 227 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 SLC25A47Q6Q0C1 308 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 FGD2Q7Z6J4 655 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 GLB1L2Q8IW92 636 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 SPARTQ8N0X7 666 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 ACBD7Q8N6N7 88 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 OR52I1Q8NGK6 324 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 OR9Q1Q8NGQ5 310 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 OR6N1Q8NGY5 312 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 EMC6Q9BV81 110 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 YIPF3Q9GZM5 350 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 SRA1Q9HD15 236 aaKnown RBP13.55□□□□□ -0.24
SS18-215ENST00000580642 ZNF835Q9Y2P0 537 aa13.55□□□□□ -0.24
SS18-215ENST00000580642 MBD3L4A6NDZ8 208 aaPredicted RBP13.54□□□□□ -0.24
SS18-215ENST00000580642 MBD3L3A6NE82 208 aaPredicted RBP13.54□□□□□ -0.24
SS18-215ENST00000580642 MBD3L5A6NJ08 208 aaPredicted RBP13.54□□□□□ -0.24
SS18-215ENST00000580642 RPL36A-HNRNPH2H7BZ11 118 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 PHYHO14832 338 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 STSP08842 583 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 CTLA4P16410 223 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 JUNBP17275 347 aaPredicted RBP13.54□□□□□ -0.24
SS18-215ENST00000580642 TIMP3P35625 211 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 GUCA1AP43080 201 aaPredicted RBP13.54□□□□□ -0.24
SS18-215ENST00000580642 BLMHQ13867 455 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 IRF3Q14653 427 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 KCNMB1Q16558 191 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 C3AR1Q16581 482 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 TMEM154Q6P9G4 183 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 FOXL2NBQ6ZUU3 175 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 SLC16A9Q7RTY1 509 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 ABHD12BQ7Z5M8 362 aaPredicted RBP13.54□□□□□ -0.24
SS18-215ENST00000580642 ZNF454Q8N9F8 522 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 SYT14Q8NB59 555 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 OR6K6Q8NGW6 343 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 MBD3L2Q8NHZ7 208 aaPredicted RBP13.54□□□□□ -0.24
SS18-215ENST00000580642 MCHR2Q969V1 340 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 TRIB1Q96RU8 372 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms