RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 LINC01590Q5TEZ4 76 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 RPTNQ6XPR3 784 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 MEPCEQ7L2J0 689 aaKnown RBP14.3□□□□□ -0.12
SS18-211ENST00000578954 AAED1Q7RTV5 226 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 DOLPP1Q86YN1 238 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 OR6V1Q8N148 313 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 OR9Q1Q8NGQ5 310 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 ZFP3Q96NJ6 502 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 LINC00470Q9BZP3 86 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 NUAK2Q9H093 628 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 ZNF696Q9H7X3 374 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 PARPBPQ9NWS1 579 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 ASB6Q9NWX5 421 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 GLTPQ9NZD2 209 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 WARS2Q9UGM6 360 aaKnown RBP14.3□□□□□ -0.12
SS18-211ENST00000578954 PSORS1C1Q9UIG5 152 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 MYRFQ9Y2G1 1151 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 NOSIPQ9Y314 301 aaKnown RBP14.3□□□□□ -0.12
SS18-211ENST00000578954 COL6A6A6NMZ7 2263 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 POLEQ07864 2286 aa14.3□□□□□ -0.12
SS18-211ENST00000578954 OR6C65A6NJZ3 312 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 DCTN6O00399 190 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 XPNPEP2O43895 674 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 SLC43A1O75387 559 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 GLCEO94923 617 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 TNFAIP8O95379 198 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 CRHP06850 196 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 CTLA4P16410 223 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 TIMP3P35625 211 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 CSNK1A1P48729 337 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 CENPAP49450 140 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 NUDT6P53370 316 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 CLRN1P58418 232 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 GABARAPL2P60520 117 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 SLC35A2P78381 396 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 LGALS3BPQ08380 585 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 APOFQ13790 326 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 GGTLC2Q14390 218 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 STK11Q15831 433 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 C10orf128Q5T292 105 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 RIPPLY2Q5TAB7 128 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 DNM1P34Q6PK57 102 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 SLC25A47Q6Q0C1 308 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 SYT14Q8NB59 555 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 BPIFB6Q8NFQ5 453 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 TSSK2Q96PF2 358 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 RBP7Q96R05 134 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 SIGLEC11Q96RL6 698 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 TEAD3Q99594 435 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 DUSP21Q9H596 190 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 CNOT2Q9NZN8 540 aaKnown RBP14.29□□□□□ -0.12
SS18-211ENST00000578954 H2AFY2Q9P0M6 372 aaPredicted RBP14.29□□□□□ -0.12
SS18-211ENST00000578954 BLOC1S6Q9UL45 172 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 CLEC4AQ9UMR7 237 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 B9D1Q9UPM9 204 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 RPL36Q9Y3U8 105 aaKnown RBP14.29□□□□□ -0.12
SS18-211ENST00000578954 ARHGAP21Q5T5U3 1957 aa14.29□□□□□ -0.12
SS18-211ENST00000578954 IGKV1D-43A0A0B4J1Z2 117 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 FAM20BO75063 409 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 MRPL33O75394 65 aaKnown RBP14.28□□□□□ -0.12
SS18-211ENST00000578954 CEACAM8P31997 349 aaPredicted RBP14.28□□□□□ -0.12
SS18-211ENST00000578954 MTNR1AP48039 350 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 FMODQ06828 376 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 LCN1P1Q5VSP4 162 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 LRFN4Q6PJG9 635 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 B3GNT6Q6ZMB0 384 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 FOXL2NBQ6ZUU3 175 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 FAM214BQ7L5A3 538 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 ZNRF4Q8WWF5 429 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 IPCEF1Q8WWN9 437 aaPredicted RBP14.28□□□□□ -0.12
SS18-211ENST00000578954 MCHR2Q969V1 340 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 ZNF775Q96BV0 537 aaPredicted RBP14.28□□□□□ -0.12
SS18-211ENST00000578954 OR51V1Q9H2C8 321 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 SLCO5A1Q9H2Y9 848 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 MARCH7Q9H992 704 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 SCN3BQ9NY72 215 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 TPRKBQ9Y3C4 175 aa14.28□□□□□ -0.12
SS18-211ENST00000578954 EFCAB10A6NFE3 127 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 SLC16A7O60669 478 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 KHDRBS3O75525 346 aaKnown RBP14.27□□□□□ -0.13
SS18-211ENST00000578954 TOXO94900 526 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 GYPBP06028 91 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 LYNP07948 512 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 GSTT1P30711 240 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 PYCR1P32322 319 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 BLVRAP53004 296 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 RAB40BQ12829 278 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 KLHL12Q53G59 568 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 PHYHD1Q5SRE7 291 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 CARD17Q5XLA6 110 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 NUFIP2Q7Z417 695 aaKnown RBP14.27□□□□□ -0.13
SS18-211ENST00000578954 OR6K3Q8NGY3 331 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 OR6N1Q8NGY5 312 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 GGHQ92820 318 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 OTULINQ96BN8 352 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 TTYH2Q9BSA4 534 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 RHNO1Q9BSD3 238 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 SRA1Q9HD15 236 aaKnown RBP14.27□□□□□ -0.13
SS18-211ENST00000578954 AMBNQ9NP70 447 aa14.27□□□□□ -0.13
SS18-211ENST00000578954 PAK1IP1Q9NWT1 392 aaPredicted RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms