RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 LRFN4Q6PJG9 635 aa18.03■□□□□ 0.48
VPS53-216ENST00000574029 DLEU7Q6UYE1 221 aa18.03■□□□□ 0.48
VPS53-216ENST00000574029 LRRC37BQ96QE4 947 aa18.03■□□□□ 0.48
VPS53-216ENST00000574029 CPPED1Q9BRF8 314 aaPredicted RBP18.03■□□□□ 0.48
VPS53-216ENST00000574029 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.03■□□□□ 0.48
VPS53-216ENST00000574029 IGLV3-9A0A075B6K5 115 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 SLC22A23A1A5C7 686 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 PPIHO43447 177 aaKnown RBP18.02■□□□□ 0.48
VPS53-216ENST00000574029 LYPD3O95274 346 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 CFPP27918 469 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 MAGEB1P43366 347 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 NPTX1Q15818 432 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 DUSP7Q16829 419 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 RUNDC3AQ59EK9 446 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 PTOV1Q86YD1 416 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 PAQR4Q8N4S7 273 aaPredicted RBP18.02■□□□□ 0.48
VPS53-216ENST00000574029 SLC30A7Q8NEW0 376 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 GPR32P1Q8NGA4 272 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 OR6T1Q8NGN1 323 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 OR51F2Q8NH61 342 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 ZNF566Q969W8 418 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 SLC25A44Q96H78 314 aaPredicted RBP18.02■□□□□ 0.48
VPS53-216ENST00000574029 SIKE1Q9BRV8 207 aa18.02■□□□□ 0.48
VPS53-216ENST00000574029 TRAV20A0A0B4J274 112 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 C17orf100A8MU93 164 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 DHHO43323 396 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 CH25HO95992 272 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 CLPTM1O96005 669 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 THY1P04216 161 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 FAM157BP0CG42 384 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 ZNF250P15622 560 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 ATP4BP51164 291 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 SCGB2A2Q13296 93 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 NKPD1Q17RQ9 610 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 ALKBH6Q3KRA9 238 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 MMEL1Q495T6 779 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 AGKQ53H12 422 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 ENTPD8Q5MY95 495 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 DPPA2Q7Z7J5 298 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 C11orf65Q8NCR3 313 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 SH3GL3Q99963 347 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 CCDC134Q9H6E4 229 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 TAAR3PQ9P1P4 343 aa18.01■□□□□ 0.47
VPS53-216ENST00000574029 CPSF4LA6NMK7 179 aaKnown RBP18■□□□□ 0.47
VPS53-216ENST00000574029 M0QX08 132 aa18■□□□□ 0.47
VPS53-216ENST00000574029 RNF13O43567 381 aa18■□□□□ 0.47
VPS53-216ENST00000574029 FARS2O95363 451 aaKnown RBP18■□□□□ 0.47
VPS53-216ENST00000574029 SNAP29O95721 258 aa18■□□□□ 0.47
VPS53-216ENST00000574029 PGA4P0DJD7 388 aa18■□□□□ 0.47
VPS53-216ENST00000574029 PGA3P0DJD8 388 aa18■□□□□ 0.47
VPS53-216ENST00000574029 SELENOVP59797 346 aa18■□□□□ 0.47
VPS53-216ENST00000574029 MYBPC1Q00872 1141 aa18■□□□□ 0.47
VPS53-216ENST00000574029 RUNX1T1Q06455 604 aa18■□□□□ 0.47
VPS53-216ENST00000574029 RBBP4Q09028 425 aa18■□□□□ 0.47
VPS53-216ENST00000574029 MELKQ14680 651 aa18■□□□□ 0.47
VPS53-216ENST00000574029 SHQ1Q6PI26 577 aaKnown RBP18■□□□□ 0.47
VPS53-216ENST00000574029 TTC33Q6PID6 262 aaPredicted RBP18■□□□□ 0.47
VPS53-216ENST00000574029 LRRC17Q8N6Y2 441 aa18■□□□□ 0.47
VPS53-216ENST00000574029 SYNPRQ8TBG9 265 aa18■□□□□ 0.47
VPS53-216ENST00000574029 TSPAN32Q96QS1 320 aa18■□□□□ 0.47
VPS53-216ENST00000574029 C1orf198Q9H425 327 aa18■□□□□ 0.47
VPS53-216ENST00000574029 HINT3Q9NQE9 182 aaKnown RBP18■□□□□ 0.47
VPS53-216ENST00000574029 NANSQ9NR45 359 aa18■□□□□ 0.47
VPS53-216ENST00000574029 GPR160Q9UJ42 338 aa18■□□□□ 0.47
VPS53-216ENST00000574029 ZNF229Q9UJW7 825 aa18■□□□□ 0.47
VPS53-216ENST00000574029 PNPP00491 289 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 OPN1SWP03999 348 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 QDPRP09417 244 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 ASAH2BP0C7U1 165 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 CCL2P13500 99 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 KLF3P57682 345 aaPredicted RBP17.99■□□□□ 0.47
VPS53-216ENST00000574029 HIST3H3Q16695 136 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 PCGF3Q3KNV8 242 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 NRN1LQ496H8 165 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 TMEM53Q6P2H8 277 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 RBM45Q8IUH3 476 aaKnown RBP17.99■□□□□ 0.47
VPS53-216ENST00000574029 OR4K5Q8NGD3 323 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 OR4D11Q8NGI4 311 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 ZNF519Q8TB69 540 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 ADAMTS16Q8TE57 1224 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 ZNF426Q9BUY5 554 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 PLA2G12AQ9BZM1 189 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 RNF121Q9H920 327 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 CDH20Q9HBT6 801 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 G6PC2Q9NQR9 355 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 SLCO1C1Q9NYB5 712 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 NKIRAS2Q9NYR9 191 aa17.99■□□□□ 0.47
VPS53-216ENST00000574029 CDC14BO60729 498 aa17.98■□□□□ 0.47
VPS53-216ENST00000574029 ANPEPP15144 967 aa17.98■□□□□ 0.47
VPS53-216ENST00000574029 CRYBB2P43320 205 aa17.98■□□□□ 0.47
VPS53-216ENST00000574029 COMPP49747 757 aaPredicted RBP17.98■□□□□ 0.47
VPS53-216ENST00000574029 ERVS71-1P61550 626 aa17.98■□□□□ 0.47
VPS53-216ENST00000574029 CCL8P80075 99 aa17.98■□□□□ 0.47
VPS53-216ENST00000574029 SLC36A2Q495M3 483 aa17.98■□□□□ 0.47
VPS53-216ENST00000574029 FAHD2BQ6P2I3 314 aaPredicted RBP17.98■□□□□ 0.47
VPS53-216ENST00000574029 TMEM154Q6P9G4 183 aa17.98■□□□□ 0.47
VPS53-216ENST00000574029 C1orf229Q6ZS94 237 aaPredicted RBP17.98■□□□□ 0.47
VPS53-216ENST00000574029 TSPYL5Q86VY4 417 aaPredicted RBP17.98■□□□□ 0.47
VPS53-216ENST00000574029 TEX29Q8N6K0 151 aa17.98■□□□□ 0.47
VPS53-216ENST00000574029 OR1J2Q8NGS2 313 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms