RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ARIH2OSQ8N7S6 290 aa18.12■□□□□ 0.49
VPS53-210ENST00000571456 DACH2Q96NX9 599 aa18.12■□□□□ 0.49
VPS53-210ENST00000571456 KATNB1Q9BVA0 655 aa18.12■□□□□ 0.49
VPS53-210ENST00000571456 SMURF2Q9HAU4 748 aa18.12■□□□□ 0.49
VPS53-210ENST00000571456 MOV10Q9HCE1 1003 aaKnown RBP18.12■□□□□ 0.49
VPS53-210ENST00000571456 KIAA1324LA8MWY0 1029 aaPredicted RBP18.11■□□□□ 0.49
VPS53-210ENST00000571456 XKRYO14609 159 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 TXNDC12O95881 172 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 PGA4P0DJD7 388 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 PGA3P0DJD8 388 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 HOXB1P14653 301 aaPredicted RBP18.11■□□□□ 0.49
VPS53-210ENST00000571456 ZNF23P17027 643 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 IGHV1-2P23083 117 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 CLRN1P58418 232 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 CXorf67Q86X51 503 aaPredicted RBP18.11■□□□□ 0.49
VPS53-210ENST00000571456 MEX3DQ86XN8 651 aaKnown RBP18.11■□□□□ 0.49
VPS53-210ENST00000571456 PRIMA1Q86XR5 153 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 ZNF433Q8N7K0 673 aaPredicted RBP18.11■□□□□ 0.49
VPS53-210ENST00000571456 FAM222BQ8WU58 562 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 LRTOMTQ8WZ04 291 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 TMEM54Q969K7 222 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 SNX18Q96RF0 628 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 EMC6Q9BV81 110 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 MRPL13Q9BYD1 178 aaKnown RBP18.11■□□□□ 0.49
VPS53-210ENST00000571456 GABARAPL1Q9H0R8 117 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 OBP2BQ9NPH6 170 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 GLTPQ9NZD2 209 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 KIF17Q9P2E2 1029 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 ZNF346Q9UL40 294 aaKnown RBP18.11■□□□□ 0.49
VPS53-210ENST00000571456 TLN2Q9Y4G6 2542 aa18.11■□□□□ 0.49
VPS53-210ENST00000571456 CIB4A0PJX0 185 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 ERICH4A6NGS2 130 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 H3BNX3 289 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 EDNRAP25101 427 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 KIR2DL3P43628 341 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 ZNF133P52736 654 aaPredicted RBP18.1■□□□□ 0.49
VPS53-210ENST00000571456 CAMK2DQ13557 499 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 HIST3H3Q16695 136 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 THEM4Q5T1C6 240 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 BHLHA15Q7RTS1 189 aaPredicted RBP18.1■□□□□ 0.49
VPS53-210ENST00000571456 FAM122BQ7Z309 247 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 TMEM179BQ7Z7N9 219 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 CCDC36Q8IYA8 594 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 ATG16L2Q8NAA4 619 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 NOXO1Q8NFA2 376 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 ZNF519Q8TB69 540 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 HSD17B8Q92506 261 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 ZNF570Q96NI8 536 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 MUS81Q96NY9 551 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 RBP7Q96R05 134 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 ULBP2Q9BZM5 246 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 ZNF226Q9NYT6 803 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 ST6GALNAC2Q9UJ37 374 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 POFUT2Q9Y2G5 429 aa18.1■□□□□ 0.49
VPS53-210ENST00000571456 FBN1P35555 2871 aaKnown RBP18.1■□□□□ 0.49
VPS53-210ENST00000571456 HRNRQ86YZ3 2850 aaPredicted RBP18.09■□□□□ 0.49
VPS53-210ENST00000571456 UPK3AO75631 287 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 IGHV3-9P01782 118 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 HOXC12P31275 282 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 ACVR1BP36896 505 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 FXYD6P3P58550 94 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 ADAM8P78325 824 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 ROR2Q01974 943 aaKnown RBP18.09■□□□□ 0.49
VPS53-210ENST00000571456 MELKQ14680 651 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 NRN1LQ496H8 165 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 TIMM23BQ5SRD1 257 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 FAHD1Q6P587 224 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 ZNF627Q7L945 461 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.09■□□□□ 0.49
VPS53-210ENST00000571456 PARP8Q8N3A8 854 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 MAGEE2Q8TD90 523 aaPredicted RBP18.09■□□□□ 0.49
VPS53-210ENST00000571456 GTPBP3Q969Y2 492 aaKnown RBP18.09■□□□□ 0.49
VPS53-210ENST00000571456 ALKBH3Q96Q83 286 aaPredicted RBP18.09■□□□□ 0.49
VPS53-210ENST00000571456 TSPAN32Q96QS1 320 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 KCNK17Q96T54 332 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 SMR3AQ99954 134 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 IFT27Q9BW83 186 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 TEX12Q9BXU0 123 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 CRLF2Q9HC73 371 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 GPR35Q9HC97 309 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 NGBQ9NPG2 151 aa18.09■□□□□ 0.49
VPS53-210ENST00000571456 ZNF99A8MXY4 864 aaPredicted RBP18.08■□□□□ 0.48
VPS53-210ENST00000571456 M0R3G1 203 aa18.08■□□□□ 0.48
VPS53-210ENST00000571456 TRMUO75648 421 aaKnown RBP18.08■□□□□ 0.48
VPS53-210ENST00000571456 ITGA5P08648 1049 aa18.08■□□□□ 0.48
VPS53-210ENST00000571456 ZNF26P17031 533 aaPredicted RBP18.08■□□□□ 0.48
VPS53-210ENST00000571456 ERVK-25P63136 954 aa18.08■□□□□ 0.48
VPS53-210ENST00000571456 TOP3AQ13472 1001 aaPredicted RBP18.08■□□□□ 0.48
VPS53-210ENST00000571456 ANKRD16Q6P6B7 361 aa18.08■□□□□ 0.48
VPS53-210ENST00000571456 THSD4Q6ZMP0 1018 aa18.08■□□□□ 0.48
VPS53-210ENST00000571456 CXXC5Q7LFL8 322 aaKnown RBP18.08■□□□□ 0.48
VPS53-210ENST00000571456 AMIGO2Q86SJ2 522 aa18.08■□□□□ 0.48
VPS53-210ENST00000571456 OR2T33Q8NG76 320 aa18.08■□□□□ 0.48
VPS53-210ENST00000571456 TEX47Q8TBZ9 253 aa18.08■□□□□ 0.48
VPS53-210ENST00000571456 SAMD8Q96LT4 415 aa18.08■□□□□ 0.48
VPS53-210ENST00000571456 NIPSNAP1Q9BPW8 284 aa18.08■□□□□ 0.48
VPS53-210ENST00000571456 MED18Q9BUE0 208 aa18.08■□□□□ 0.48
VPS53-210ENST00000571456 ACTR6Q9GZN1 396 aa18.08■□□□□ 0.48
VPS53-210ENST00000571456 MAGED1Q9Y5V3 778 aaPredicted RBP18.08■□□□□ 0.48
VPS53-210ENST00000571456 SH3D21A4FU49 640 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms