RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 PPP3R2Q96LZ3 170 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 SFXN2Q96NB2 322 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 ZIM3Q96PE6 472 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 KCNA7Q96RP8 456 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 HBEGFQ99075 208 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 SEPHS2Q99611 448 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 VGLL1Q99990 258 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 PAIP2Q9BPZ3 127 aaKnown RBP3.38□□□□□ -1.87
NUP88-202ENST00000570937 URM1Q9BTM9 101 aaKnown RBP3.38□□□□□ -1.87
NUP88-202ENST00000570937 CABLES2Q9BTV7 478 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 ZNF717Q9BY31 904 aaPredicted RBP3.38□□□□□ -1.87
NUP88-202ENST00000570937 ACPTQ9BZG2 426 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 TRIM4Q9C037 500 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 SHARPINQ9H0F6 387 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 OPA3Q9H6K4 179 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 TRIM45Q9H8W5 580 aaPredicted RBP3.38□□□□□ -1.87
NUP88-202ENST00000570937 CXorf21Q9HAI6 301 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 ASF1BQ9NVP2 202 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 TAS2R9Q9NYW1 312 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 TAS2R7Q9NYW3 318 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 CNIH4Q9P003 139 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 SLC17A7Q9P2U7 560 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 B4GALT7Q9UBV7 327 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 PRODH2Q9UF12 536 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 BCAP29Q9UHQ4 241 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 MRTO4Q9UKD2 239 aaKnown RBP3.38□□□□□ -1.87
NUP88-202ENST00000570937 EIF3LQ9Y262 564 aaKnown RBP3.38□□□□□ -1.87
NUP88-202ENST00000570937 MDC1Q14676 2089 aaKnown RBP3.38□□□□□ -1.87
NUP88-202ENST00000570937 ANKRD12Q6UB98 2062 aa3.38□□□□□ -1.87
NUP88-202ENST00000570937 ZFYVE26Q68DK2 2539 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 A0A1B0GUH1 482 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 A0A1W2PPQ1 181 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 TRPC5OSA6NMA1 111 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 A8MV72 311 aaPredicted RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 UBFD1O14562 309 aaKnown RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 TFECO14948 347 aaPredicted RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 ACOX3O15254 700 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 NME2P1O60361 137 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 PLOD3O60568 738 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 LYPLA1O75608 230 aaPredicted RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 CDK2AP2O75956 126 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 SNX4O95219 450 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 F10P00742 488 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 IGKV3-11P04433 115 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 SERPINE1P05121 402 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 IL3P08700 152 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 LINC00032P0C843 101 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 SMIM18P0DKX4 95 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 PRPS2P11908 318 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 ZNF24P17028 368 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 PRPS1L1P21108 318 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 CNR1P21554 472 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 DRD5P21918 477 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 DNASE1P24855 282 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 NTSP30990 170 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 GCKP35557 465 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 HPCAL1P37235 193 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 FEN1P39748 380 aaKnown RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 SLC1A6P48664 564 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 EFNA3P52797 238 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 FOXA1P55317 472 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 ABCE1P61221 599 aaKnown RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 ERVK-8P63133 956 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 KCNJ2P63252 427 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 MRPS22P82650 360 aaKnown RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 ZNF415Q09FC8 603 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 FUT7Q11130 342 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 HSPB3Q12988 150 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 STX3Q13277 289 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 CASP8Q14790 479 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 ZNHIT3Q15649 155 aaPredicted RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 CHI3L2Q15782 390 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 SMU1Q2TAY7 513 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 VPS26BQ4G0F5 336 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 RFTN2Q52LD8 501 aaPredicted RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 PIGGQ5H8A4 983 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 SLC25A53Q5H9E4 307 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 TCHHL1Q5QJ38 904 aaPredicted RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 BEND6Q5SZJ8 279 aaPredicted RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 CLEC6AQ6EIG7 209 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 PRR27Q6MZM9 219 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 SLC25A47Q6Q0C1 308 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 SCIMPQ6UWF3 145 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 GALNTL5Q7Z4T8 443 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 SLC22A16Q86VW1 577 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 HOGA1Q86XE5 327 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 LRRC34Q8IZ02 419 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 MDS2Q8NDY4 140 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 CDC26Q8NHZ8 85 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 RAB3IL1Q8TBN0 382 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 AGR3Q8TD06 166 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 C16orf78Q8WTQ4 265 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 TWIST2Q8WVJ9 160 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 PPCDCQ96CD2 204 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 TUBGCP3Q96CW5 907 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 C19orf60Q96EN9 201 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 CNRIP1Q96F85 164 aaPredicted RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 ZBED6CLQ96FA7 236 aaPredicted RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 SIGLEC12Q96PQ1 595 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 GAL3ST4Q96RP7 486 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms