RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 SEC14L2O76054 403 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 UBL3O95164 117 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 CRYAAP02489 173 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 CD14P08571 375 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 QDPRP09417 244 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 FPR3P25089 353 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 ARR3P36575 388 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 ACVR1BP36896 505 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 ART1P52961 327 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 IST1P53990 364 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 MS4A2Q01362 244 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 LAPTM4AQ15012 233 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 SEC23BQ15437 767 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 NRN1LQ496H8 165 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 ZNF672Q499Z4 452 aaPredicted RBP11.35□□□□□ -0.59
CLK3-224ENST00000568605 ARMC4Q5T2S8 1044 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 RPL13AP3Q6NVV1 102 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 DPPA2Q7Z7J5 298 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 MEX3DQ86XN8 651 aaKnown RBP11.35□□□□□ -0.59
CLK3-224ENST00000568605 FAM169BQ8N8A8 192 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 SYT14Q8NB59 555 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 TMEM171Q8WVE6 324 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 SLC38A2Q96QD8 506 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 TSPAN32Q96QS1 320 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 RBP7Q96R05 134 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 TNFRSF13CQ96RJ3 184 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 FOXC2Q99958 501 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 FUZQ9BT04 418 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 LIME1Q9H400 295 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 CXorf56Q9H5V9 222 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 DENND2DQ9H6A0 471 aaPredicted RBP11.35□□□□□ -0.59
CLK3-224ENST00000568605 LYVE1Q9Y5Y7 322 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 ACOT8O14734 319 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 RAB36O95755 333 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 PLAUP00749 431 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 IGKV3-15P01624 115 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 OR8G3PP0DMU2 310 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 SDHAP31040 664 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 GUCA1AP43080 201 aaPredicted RBP11.34□□□□□ -0.59
CLK3-224ENST00000568605 RPS6KA3P51812 740 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 HIST3H3Q16695 136 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 GSG1Q2KHT4 349 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 DEFB113Q30KQ7 82 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 C10orf128Q5T292 105 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 GPR139Q6DWJ6 353 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 OR2T5Q6IEZ7 315 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 PGM2L1Q6PCE3 622 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 SMARCD3Q6STE5 483 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 IGFN1Q86VF2 1251 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 SPATA24Q86W54 205 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 LRRC75AQ8NAA5 344 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 OR2T29Q8NH02 315 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 MCHR2Q969V1 340 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 ZNF837Q96EG3 531 aaPredicted RBP11.34□□□□□ -0.59
CLK3-224ENST00000568605 GPX7Q96SL4 187 aaPredicted RBP11.34□□□□□ -0.59
CLK3-224ENST00000568605 KCNK17Q96T54 332 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 C1QTNF6Q9BXI9 259 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 MRPL13Q9BYD1 178 aaKnown RBP11.34□□□□□ -0.59
CLK3-224ENST00000568605 KCNN2Q9H2S1 579 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 TMEM38BQ9NVV0 291 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 CRNNQ9UBG3 495 aaPredicted RBP11.34□□□□□ -0.59
CLK3-224ENST00000568605 POMPQ9Y244 141 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 SIGLEC7Q9Y286 467 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 SAMHD1Q9Y3Z3 626 aaKnown RBP11.34□□□□□ -0.59
CLK3-224ENST00000568605 ARFGEF3Q5TH69 2177 aa11.34□□□□□ -0.59
CLK3-224ENST00000568605 GSC2O15499 205 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 AHCYL1O43865 530 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 SMPD2O60906 423 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 CCNB2O95067 398 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 CD79AP11912 226 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 CBR1P16152 277 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 CD53P19397 219 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 SLC6A6P31641 620 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 IDH3GP51553 393 aaPredicted RBP11.33□□□□□ -0.6
CLK3-224ENST00000568605 ZNF133P52736 654 aaPredicted RBP11.33□□□□□ -0.6
CLK3-224ENST00000568605 TUBA1BP68363 451 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 TUBA4AP68366 448 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 MYBPC1Q00872 1141 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 NPRL3Q12980 569 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 TSPAN31Q12999 210 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 KRR1Q13601 381 aaKnown RBP11.33□□□□□ -0.6
CLK3-224ENST00000568605 SLC36A2Q495M3 483 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 THEM4Q5T1C6 240 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 C1orf94Q6P1W5 598 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 TMEM53Q6P2H8 277 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 CCDC121Q6ZUS5 278 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 TUBA1AQ71U36 451 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 ADCK1Q86TW2 530 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 MDP1Q86V88 176 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 ARIH2OSQ8N7S6 290 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 IL17RDQ8NFM7 739 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 OR52L1Q8NGH7 329 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 ZNF519Q8TB69 540 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 GNPDA2Q8TDQ7 276 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 HDAC2Q92769 488 aaKnown RBP11.33□□□□□ -0.6
CLK3-224ENST00000568605 CADM1Q9BY67 442 aaKnown RBP11.33□□□□□ -0.6
CLK3-224ENST00000568605 LRMDAQ9H2I8 198 aa11.33□□□□□ -0.6
CLK3-224ENST00000568605 CISD1Q9NZ45 108 aaKnown RBP11.33□□□□□ -0.6
CLK3-224ENST00000568605 ZNF346Q9UL40 294 aaKnown RBP11.33□□□□□ -0.6
CLK3-224ENST00000568605 MED13LQ71F56 2210 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms