RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 TMEM53Q6P2H8 277 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 LRFN4Q6PJG9 635 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 NANOGNBQ7Z5D8 188 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 ZNF584Q8IVC4 421 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 LRRC17Q8N6Y2 441 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 OR4D11Q8NGI4 311 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 OR10A6Q8NH74 314 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 RDH5Q92781 318 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 THOC1Q96FV9 657 aaKnown RBP16.09■□□□□ 0.17
CLN3-218ENST00000565688 C1orf198Q9H425 327 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 GPR160Q9UJ42 338 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 B4DSR2 109 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 PTHP01270 115 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 IGHG1P01857 330 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 UMPSP11172 480 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 ACHEP22303 614 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 SRP14P37108 136 aaKnown RBP16.08■□□□□ 0.16
CLN3-218ENST00000565688 ALDH3B1P43353 468 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 DVL1P1P54792 670 aaPredicted RBP16.08■□□□□ 0.16
CLN3-218ENST00000565688 SELENOVP59797 346 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 CYLC2Q14093 348 aaPredicted RBP16.08■□□□□ 0.16
CLN3-218ENST00000565688 TRIP10Q15642 601 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 VMACQ2NL98 169 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 SLC36A2Q495M3 483 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 CCDC80Q76M96 950 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 HDDC2Q7Z4H3 204 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 LRP11Q86VZ4 500 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 SLC30A7Q8NEW0 376 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 SH3GL1Q99961 368 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 NPHS2Q9NP85 383 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 DUSP13Q9UII6 198 aa16.08■□□□□ 0.16
CLN3-218ENST00000565688 A0A1W2PPW3 197 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 A0A1W2PRG6 482 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 CENPBD1B2RD01 187 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 MGRN1O60291 552 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 QDPRP09417 244 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 PATE4P0C8F1 98 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 TCN1P20061 433 aaPredicted RBP16.07■□□□□ 0.16
CLN3-218ENST00000565688 GPR6P46095 362 aaPredicted RBP16.07■□□□□ 0.16
CLN3-218ENST00000565688 ZNF84P51523 738 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 TMEM33P57088 247 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 CLRN1P58418 232 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 CCNIQ14094 377 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 MELKQ14680 651 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 TSPYL5Q86VY4 417 aaPredicted RBP16.07■□□□□ 0.16
CLN3-218ENST00000565688 RFLNBQ8N5W9 214 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 OR4K5Q8NGD3 323 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 FGFBP3Q8TAT2 258 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 SH3GL3Q99963 347 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 POLR2J2Q9GZM3 115 aaKnown RBP16.07■□□□□ 0.16
CLN3-218ENST00000565688 POLR2J3Q9H1A7 115 aaKnown RBP16.07■□□□□ 0.16
CLN3-218ENST00000565688 RNF121Q9H920 327 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 CDH20Q9HBT6 801 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 MRGBPQ9NV56 204 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 BAG5Q9UL15 447 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 FZR1Q9UM11 496 aa16.07■□□□□ 0.16
CLN3-218ENST00000565688 A0A0G2JND7 137 aa16.06■□□□□ 0.16
CLN3-218ENST00000565688 BLOC1S5-TXNDC5H3BN57 136 aa16.06■□□□□ 0.16
CLN3-218ENST00000565688 EDF1O60869 148 aaKnown RBP16.06■□□□□ 0.16
CLN3-218ENST00000565688 SNAP29O95721 258 aa16.06■□□□□ 0.16
CLN3-218ENST00000565688 IGF2P01344 180 aa16.06■□□□□ 0.16
CLN3-218ENST00000565688 HPXP02790 462 aa16.06■□□□□ 0.16
CLN3-218ENST00000565688 MT-ND1P03886 318 aa16.06■□□□□ 0.16
CLN3-218ENST00000565688 RBM34P42696 430 aaKnown RBP16.06■□□□□ 0.16
CLN3-218ENST00000565688 GZMMP51124 257 aa16.06■□□□□ 0.16
CLN3-218ENST00000565688 SEC24CP53992 1094 aa16.06■□□□□ 0.16
CLN3-218ENST00000565688 MAD2L1BPQ15013 274 aaPredicted RBP16.06■□□□□ 0.16
CLN3-218ENST00000565688 HIST3H3Q16695 136 aa16.06■□□□□ 0.16
CLN3-218ENST00000565688 RGS7BPQ6MZT1 257 aaPredicted RBP16.06■□□□□ 0.16
CLN3-218ENST00000565688 SLC16A14Q7RTX9 510 aa16.06■□□□□ 0.16
CLN3-218ENST00000565688 OR1J2Q8NGS2 313 aa16.06■□□□□ 0.16
CLN3-218ENST00000565688 PRSS27Q9BQR3 290 aa16.06■□□□□ 0.16
CLN3-218ENST00000565688 ZNF416Q9BWM5 594 aa16.06■□□□□ 0.16
CLN3-218ENST00000565688 LRMDAQ9H2I8 198 aa16.06■□□□□ 0.16
CLN3-218ENST00000565688 MEPEQ9NQ76 525 aaPredicted RBP16.06■□□□□ 0.16
CLN3-218ENST00000565688 MYEF2Q9P2K5 600 aaKnown RBP16.06■□□□□ 0.16
CLN3-218ENST00000565688 STX18Q9P2W9 335 aaKnown RBP16.06■□□□□ 0.16
CLN3-218ENST00000565688 IQCMA0A1B0GVH7 501 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 MCIDASD6RGH6 385 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 TCF21O43680 179 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 TFP02787 698 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 SAGP10523 405 aaPredicted RBP16.05■□□□□ 0.16
CLN3-218ENST00000565688 COL8A2P25067 703 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 RAD52P43351 418 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 DAP3P51398 398 aaKnown RBP16.05■□□□□ 0.16
CLN3-218ENST00000565688 CRYBA2P53672 197 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 KLF3P57682 345 aaPredicted RBP16.05■□□□□ 0.16
CLN3-218ENST00000565688 TAS2R41P59536 307 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 PLP2Q04941 152 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 NKPD1Q17RQ9 610 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 TBC1D28Q2M2D7 210 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 MMEL1Q495T6 779 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 NANOGP8Q6NSW7 305 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 HDXQ7Z353 690 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 GLCCI1Q86VQ1 547 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 MCHR2Q969V1 340 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 SEPHS2Q99611 448 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 ECSITQ9BQ95 431 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 MRPL13Q9BYD1 178 aaKnown RBP16.05■□□□□ 0.16
CLN3-218ENST00000565688 BCL2L14Q9BZR8 327 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms