RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CEACAM19Q7Z692 300 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 OR6V1Q8N148 313 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 NKAIN3Q8N8D7 197 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 YIPF7Q8N8F6 280 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 SUMF1Q8NBK3 374 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 NOXO1Q8NFA2 376 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 OR52N5Q8NH56 324 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 RAB40AQ8WXH6 277 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 NSMAFQ92636 917 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 GHSRQ92847 366 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 FOXRED1Q96CU9 486 aaPredicted RBP6.76□□□□□ -1.33
VPS39-204ENST00000561818 CPNE2Q96FN4 548 aaPredicted RBP6.76□□□□□ -1.33
VPS39-204ENST00000561818 PGLYRP3Q96LB9 341 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 OR8B4Q96RC9 309 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 KCNK17Q96T54 332 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 TM9SF2Q99805 663 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 HCAR1Q9BXC0 346 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 ENKD1Q9H0I2 346 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 TSPAN10Q9H1Z9 355 aaPredicted RBP6.76□□□□□ -1.33
VPS39-204ENST00000561818 MED20Q9H944 212 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 TCF7L1Q9HCS4 588 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 MED11Q9P086 117 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 KLHL13Q9P2N7 655 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 DAPK2Q9UIK4 370 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 ST6GALNAC2Q9UJ37 374 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 ZNF391Q9UJN7 358 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 IKZF2Q9UKS7 526 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 CDV3Q9UKY7 258 aaKnown RBP6.76□□□□□ -1.33
VPS39-204ENST00000561818 B9D1Q9UPM9 204 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 VDAC3Q9Y277 283 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 SDK1Q7Z5N4 2213 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 KMT2EQ8IZD2 1858 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 EYSQ5T1H1 3165 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 IGLV1-36A0A0B4J1U3 117 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 FABP12A6NFH5 140 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 CENPXA8MT69 81 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 C9orf172C9J069 976 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 NPIPA2E9PIF3 369 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 C11orf98E9PRG8 122 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 NPIPA3F8WFD2 350 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 KLRC4-KLRK1H3BQV0 150 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 ADAM10O14672 748 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 SLC16A7O60669 478 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 APOL3O95236 402 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 TFP02787 698 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 ISG15P05161 165 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 MRPL3P09001 348 aaKnown RBP6.75□□□□□ -1.33
VPS39-204ENST00000561818 CALCBP10092 127 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 NPR2P20594 1047 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 SDHBP21912 280 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 APEX1P27695 318 aaKnown RBP6.75□□□□□ -1.33
VPS39-204ENST00000561818 NAA10P41227 235 aaPredicted RBP6.75□□□□□ -1.33
VPS39-204ENST00000561818 MMP16P51512 607 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 ZNF84P51523 738 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 AGFG1P52594 562 aaKnown RBP6.75□□□□□ -1.33
VPS39-204ENST00000561818 OR2B6P58173 313 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 OR12D2P58182 307 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 AP3S2P59780 193 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 GRB2P62993 217 aaKnown RBP6.75□□□□□ -1.33
VPS39-204ENST00000561818 LTBQ06643 244 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 SLC3A1Q07837 685 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 RIPPLY1Q0D2K3 151 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 DOC2BQ14184 412 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 OXA1LQ15070 435 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 BCL2A1Q16548 175 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 KCNMB1Q16558 191 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 ZNF684Q5T5D7 378 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 RIPPLY2Q5TAB7 128 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 TMEM244Q5VVB8 128 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 DMRTA1Q5VZB9 504 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 TRIQKQ629K1 86 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 TCEAL6Q6IPX3 200 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 PYHIN1Q6K0P9 492 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 SFXN4Q6P4A7 337 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 Q6ZNX1 250 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 DCDC5Q6ZRR9 648 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 KRT77Q7Z794 578 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 DPPA2Q7Z7J5 298 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.75□□□□□ -1.33
VPS39-204ENST00000561818 PARP16Q8N5Y8 322 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 IL22RA1Q8N6P7 574 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 ZNF676Q8N7Q3 588 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 TMEM178AQ8NBL3 297 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 C19orf18Q8NEA5 215 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 OR2AJ1Q8NGZ0 328 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 RNF128Q8TEB7 428 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 TCEAL3Q969E4 200 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 TMEM203Q969S6 136 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 C10orf35Q96D05 121 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 DIRAS2Q96HU8 199 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 OR5B2Q96R09 309 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 TBX5Q99593 518 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 C7orf50Q9BRJ6 194 aaKnown RBP6.75□□□□□ -1.33
VPS39-204ENST00000561818 HDHD5Q9BXW7 423 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 OR2B2Q9GZK3 357 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 C1orf198Q9H425 327 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 GP6Q9HCN6 339 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 GALNT9Q9HCQ5 603 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 ZFP64Q9NPA5 681 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 SLC17A5Q9NRA2 495 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms