RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 VRK1Q99986 396 aaPredicted RBP13.57□□□□□ -0.24
VPS39-203ENST00000561797 SPAG4Q9NPE6 437 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 RPS6KA6Q9UK32 745 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 ARL2BPQ9Y2Y0 163 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 LY6HO94772 140 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 UBL3O95164 117 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 TSPAN19P0C672 248 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 OR8G3PP0DMU2 310 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 ZNF14P17017 642 aaPredicted RBP13.56□□□□□ -0.24
VPS39-203ENST00000561797 TCN1P20061 433 aaPredicted RBP13.56□□□□□ -0.24
VPS39-203ENST00000561797 PRKCDQ05655 676 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 SNTB2Q13425 540 aaKnown RBP13.56□□□□□ -0.24
VPS39-203ENST00000561797 TOP3AQ13472 1001 aaPredicted RBP13.56□□□□□ -0.24
VPS39-203ENST00000561797 DAG1Q14118 895 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 RAB39AQ14964 217 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 ALG10Q5BKT4 473 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 CLEC2AQ6UVW9 174 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 ZNF730Q6ZMV8 503 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 HDDC2Q7Z4H3 204 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 IGFN1Q86VF2 1251 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 CYP4Z1Q86W10 505 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 ZNF525Q8N782 197 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 FAM156AQ8NDB6 213 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 NUP37Q8NFH4 326 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 OR51A7Q8NH64 312 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 MRPL13Q9BYD1 178 aaKnown RBP13.56□□□□□ -0.24
VPS39-203ENST00000561797 RNF121Q9H920 327 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 ARL8BQ9NVJ2 186 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 TMEM38BQ9NVV0 291 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 ENPP4Q9Y6X5 453 aa13.56□□□□□ -0.24
VPS39-203ENST00000561797 IGHV4-30-2A0A087WSY4 118 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 TRAV27A0A087WT01 109 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 A0A087WUU8 490 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 HTR3EA5X5Y0 456 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 VSTM5A8MXK1 200 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 EFCAB9A8MZ26 197 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 B9A039 149 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 GMNNO75496 209 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 PDE5AO76074 875 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 PRSS23O95084 383 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 FARS2O95363 451 aaKnown RBP13.55□□□□□ -0.24
VPS39-203ENST00000561797 NPR2P20594 1047 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 PCSK6P29122 969 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 ZNF84P51523 738 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 EFNA4P52798 201 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 HIST3H3Q16695 136 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 ARMC4Q5T2S8 1044 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 RRM2BQ7LG56 351 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 TSEN54Q7Z6J9 526 aaKnown RBP13.55□□□□□ -0.24
VPS39-203ENST00000561797 PIGWQ7Z7B1 504 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 CDK20Q8IZL9 346 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 OR4K5Q8NGD3 323 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 ACOT11Q8WXI4 607 aaPredicted RBP13.55□□□□□ -0.24
VPS39-203ENST00000561797 HDAC2Q92769 488 aaKnown RBP13.55□□□□□ -0.24
VPS39-203ENST00000561797 SORCS2Q96PQ0 1159 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 TNFRSF13CQ96RJ3 184 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 TXNIPQ9H3M7 391 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 TAGLN3Q9UI15 199 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 HIF3AQ9Y2N7 669 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 V9GYQ6 96 aa13.55□□□□□ -0.24
VPS39-203ENST00000561797 SH3PXD2BA1X283 911 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 hCG_2039718K7EN88 272 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 ENTPD5O75356 428 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 DCTN3O75935 186 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 SLC2A10O95528 541 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 F12P00748 615 aaPredicted RBP13.54□□□□□ -0.24
VPS39-203ENST00000561797 NR4A1P22736 598 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 MSX2P35548 267 aaPredicted RBP13.54□□□□□ -0.24
VPS39-203ENST00000561797 GPR4P46093 362 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 DSCR9P59020 149 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 CTXN1P60606 82 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 FMODQ06828 376 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 CD47Q08722 323 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 EFNB3Q15768 340 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 SLC16A14Q7RTX9 510 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 OAFQ86UD1 273 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 RNF113BQ8IZP6 322 aaKnown RBP13.54□□□□□ -0.24
VPS39-203ENST00000561797 SVOPLQ8N434 492 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 LRRC18Q8N456 261 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 FAM86B1Q8N7N1 296 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 ANKS4BQ8N8V4 417 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 OR10H5Q8NGA6 315 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 OR13C2Q8NGS9 318 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 FAM168AQ92567 244 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 LRRC37BQ96QE4 947 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 PLK3Q9H4B4 646 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 DENND2DQ9H6A0 471 aaPredicted RBP13.54□□□□□ -0.24
VPS39-203ENST00000561797 ZNF442Q9H7R0 627 aa13.54□□□□□ -0.24
VPS39-203ENST00000561797 NMNAT1Q9HAN9 279 aaPredicted RBP13.54□□□□□ -0.24
VPS39-203ENST00000561797 DCAF13Q9NV06 445 aaKnown RBP13.54□□□□□ -0.24
VPS39-203ENST00000561797 STX18Q9P2W9 335 aaKnown RBP13.54□□□□□ -0.24
VPS39-203ENST00000561797 ZNF346Q9UL40 294 aaKnown RBP13.54□□□□□ -0.24
VPS39-203ENST00000561797 FAM32AQ9Y421 112 aaKnown RBP13.54□□□□□ -0.24
VPS39-203ENST00000561797 CENPBD1B2RD01 187 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 DIRAS1O95057 198 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 ZNF35P13682 527 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 CDAP32320 146 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 RPL27P61353 136 aaKnown RBP13.53□□□□□ -0.24
VPS39-203ENST00000561797 MXRA7P84157 204 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 GALK2Q01415 458 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms