RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 TESK1Q15569 626 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 ATP6AP1Q15904 470 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 ACKR1Q16570 336 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 ANKDD1AQ495B1 522 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 ALG10Q5BKT4 473 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 ARMC4Q5T2S8 1044 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 ANKRD16Q6P6B7 361 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 KLHL24Q6TFL4 600 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 RRM2BQ7LG56 351 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 HDDC2Q7Z4H3 204 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 OAFQ86UD1 273 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 CDK20Q8IZL9 346 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 LRRC75AQ8NAA5 344 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 NOXO1Q8NFA2 376 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 OR51A7Q8NH64 312 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 MAGEE2Q8TD90 523 aaPredicted RBP8.19□□□□□ -1.1
LDLR-211ENST00000560173 ASB10Q8WXI3 467 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 ZNF566Q969W8 418 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 SLC25A44Q96H78 314 aaPredicted RBP8.19□□□□□ -1.1
LDLR-211ENST00000560173 FAM46AQ96IP4 442 aaKnown RBP8.19□□□□□ -1.1
LDLR-211ENST00000560173 TNFRSF13CQ96RJ3 184 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 PKP2Q99959 881 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 ULBP2Q9BZM5 246 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 TXNIPQ9H3M7 391 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 ESRP2Q9H6T0 727 aaKnown RBP8.19□□□□□ -1.1
LDLR-211ENST00000560173 OBP2BQ9NPH6 170 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 GLTPQ9NZD2 209 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 ST6GALNAC2Q9UJ37 374 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 PLEKHA6Q9Y2H5 1048 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 RNF115Q9Y4L5 304 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 MAGED1Q9Y5V3 778 aaPredicted RBP8.19□□□□□ -1.1
LDLR-211ENST00000560173 A0A096LPE4 126 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 A0A1W2PPZ6 126 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 ZNF99A8MXY4 864 aaPredicted RBP8.18□□□□□ -1.1
LDLR-211ENST00000560173 CENPBD1B2RD01 187 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 MCIDASD6RGH6 385 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 SEC14L2O76054 403 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 ATE1O95260 518 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 WNT11O96014 354 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 IGHG1P01857 330 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 IGHMP01871 453 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 CD3EP07766 207 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 HOXB1P14653 301 aaPredicted RBP8.18□□□□□ -1.1
LDLR-211ENST00000560173 UBE2NP61088 152 aaKnown RBP8.18□□□□□ -1.1
LDLR-211ENST00000560173 GK3PQ14409 553 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 HIST3H3Q16695 136 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 ZBED5Q49AG3 693 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 LRFN4Q6PJG9 635 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 KLHL17Q6TDP4 642 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 SPNS3Q6ZMD2 512 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 ZBTB49Q6ZSB9 765 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 ZNF627Q7L945 461 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 ZER1Q7Z7L7 766 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 IGFN1Q86VF2 1251 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 SVOPLQ8N434 492 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 OR4C15Q8NGM1 316 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 LRTOMTQ8WZ04 291 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 NINJ1Q92982 152 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 SLCO4A1Q96BD0 722 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 NMD3Q96D46 503 aaKnown RBP8.18□□□□□ -1.1
LDLR-211ENST00000560173 ALPK1Q96QP1 1244 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 GPA33Q99795 319 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 CHID1Q9BWS9 393 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 MRPL13Q9BYD1 178 aaKnown RBP8.18□□□□□ -1.1
LDLR-211ENST00000560173 UBTD1Q9HAC8 227 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 KRCC1Q9NPI7 259 aaPredicted RBP8.18□□□□□ -1.1
LDLR-211ENST00000560173 DNAJB9Q9UBS3 223 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 LYVE1Q9Y5Y7 322 aa8.18□□□□□ -1.1
LDLR-211ENST00000560173 RAI1Q7Z5J4 1906 aaPredicted RBP8.17□□□□□ -1.1
LDLR-211ENST00000560173 ARID1AO14497 2285 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 ZNF503-AS2A6NEH8 195 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 UNC119BA6NIH7 251 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 GNGT2O14610 69 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 HS3ST1O14792 307 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 DHHO43323 396 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 DENRO43583 198 aaKnown RBP8.17□□□□□ -1.1
LDLR-211ENST00000560173 PTP4A3O75365 173 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 TRMUO75648 421 aaKnown RBP8.17□□□□□ -1.1
LDLR-211ENST00000560173 TIPRLO75663 272 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 RAF1P04049 648 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 B4GALT1P15291 398 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 DNASE1P24855 282 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 FPR3P25089 353 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 PTAFRP25105 342 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 CD40P25942 277 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 ARHGDIAP52565 204 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 ZNF133P52736 654 aaPredicted RBP8.17□□□□□ -1.1
LDLR-211ENST00000560173 HMGA2P52926 109 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 CLRN1P58418 232 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 CTXN1P60606 82 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 RPL27P61353 136 aaKnown RBP8.17□□□□□ -1.1
LDLR-211ENST00000560173 TUBA1BP68363 451 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 TUBA4AP68366 448 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 TOP3AQ13472 1001 aaPredicted RBP8.17□□□□□ -1.1
LDLR-211ENST00000560173 LRRC36Q1X8D7 754 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 FAM205BPQ63HN1 556 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 LPCAT4Q643R3 524 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 ADAM5Q6NVV9 412 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 TMEM108Q6UXF1 575 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 ZNF813Q6ZN06 617 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms