RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 KCNK17Q96T54 332 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 SPOCK3Q9BQ16 436 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 ACTR6Q9GZN1 396 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 DCLRE1BQ9H816 532 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 CRLF2Q9HC73 371 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 GPR35Q9HC97 309 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 NGBQ9NPG2 151 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 OBP2BQ9NPH6 170 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 NPDC1Q9NQX5 325 aaPredicted RBP8.88□□□□□ -0.99
USP3-216ENST00000559873 ZNF226Q9NYT6 803 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 KLHL21Q9UJP4 597 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 AMDHD2Q9Y303 409 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 IER3IP1Q9Y5U9 82 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 MAGED1Q9Y5V3 778 aaPredicted RBP8.88□□□□□ -0.99
USP3-216ENST00000559873 PRSS37A4D1T9 235 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 SH3D21A4FU49 640 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 ZNF99A8MXY4 864 aaPredicted RBP8.87□□□□□ -0.99
USP3-216ENST00000559873 SOCS2O14508 198 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 DHHO43323 396 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 MGRN1O60291 552 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 GOSR1O95249 250 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 CLDN1O95832 211 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 ITGA5P08648 1049 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 QDPRP09417 244 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 HOXB1P14653 301 aaPredicted RBP8.87□□□□□ -0.99
USP3-216ENST00000559873 ANPEPP15144 967 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 ZNF26P17031 533 aaPredicted RBP8.87□□□□□ -0.99
USP3-216ENST00000559873 PRKACGP22612 351 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 CRABP1P29762 137 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 CCKARP32238 428 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 GRK5P34947 590 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 KIR2DL3P43628 341 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 ALDH3A2P51648 485 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 RAD23AP54725 363 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 FXYD6P3P58550 94 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 UBE2NP61088 152 aaKnown RBP8.87□□□□□ -0.99
USP3-216ENST00000559873 ELF3P78545 371 aaPredicted RBP8.87□□□□□ -0.99
USP3-216ENST00000559873 PPP2R2BQ00005 443 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 DAG1Q14118 895 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 TRIP10Q15642 601 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 PGGHGQ32M88 737 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 NRN1LQ496H8 165 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 TIMM23BQ5SRD1 257 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 C10orf128Q5T292 105 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 ANKRD16Q6P6B7 361 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 CCDC36Q8IYA8 594 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 LNX2Q8N448 690 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 SYT14Q8NB59 555 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 OR1K1Q8NGR3 316 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 FAM222BQ8WU58 562 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 HSD17B8Q92506 261 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 HDAC2Q92769 488 aaKnown RBP8.87□□□□□ -0.99
USP3-216ENST00000559873 MCHR2Q969V1 340 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 S100PBPQ96BU1 408 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 RASD2Q96D21 266 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 MUCL1Q96DR8 90 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 PLEKHA8Q96JA3 519 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 DACH2Q96NX9 599 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 CIB1Q99828 191 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 MRPL13Q9BYD1 178 aaKnown RBP8.87□□□□□ -0.99
USP3-216ENST00000559873 PLA2G12AQ9BZM1 189 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 VCXQ9H320 206 aa8.87□□□□□ -0.99
USP3-216ENST00000559873 PLEKHB1Q9UF11 243 aaPredicted RBP8.87□□□□□ -0.99
USP3-216ENST00000559873 SLC22A23A1A5C7 686 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 OR5H1A6NKK0 313 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 C19orf84I3L1E1 186 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 BHLHE40O14503 412 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 EI24O14681 340 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 CASKO14936 926 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 WNT11O96014 354 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 HMGN1P05114 100 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 IGFBP2P18065 325 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 NPR2P20594 1047 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 PAICSP22234 425 aaKnown RBP8.86□□□□□ -0.99
USP3-216ENST00000559873 GRNP28799 593 aaKnown RBP8.86□□□□□ -0.99
USP3-216ENST00000559873 DAPP51397 102 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 CRISP1P54107 249 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 MYBPC1Q00872 1141 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.86□□□□□ -0.993e-7■■■■□ 20.8
USP3-216ENST00000559873 HIST3H3Q16695 136 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 C9orf135Q5VTT2 229 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 KDM4DQ6B0I6 523 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 LEG1Q6P5S2 330 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 ZNF813Q6ZN06 617 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 ZBTB49Q6ZSB9 765 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 DPPA2Q7Z7J5 298 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 DMRTC2Q8IXT2 367 aaPredicted RBP8.86□□□□□ -0.99
USP3-216ENST00000559873 CBR4Q8N4T8 237 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 OR8D4Q8NGM9 314 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 SLC38A2Q96QD8 506 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 FOXB1Q99853 325 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 SYT4Q9H2B2 425 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 KCNN2Q9H2S1 579 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 SLC25A19Q9HC21 320 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 USE1Q9NZ43 259 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 VSX1Q9NZR4 365 aaPredicted RBP8.86□□□□□ -0.99
USP3-216ENST00000559873 REV1Q9UBZ9 1251 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 KCNN3Q9UGI6 736 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 FREM1Q5H8C1 2179 aa8.86□□□□□ -0.99
USP3-216ENST00000559873 H7C1C5 153 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms