RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 C2orf76Q3KRA6 126 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 DGAT2L6Q6ZPD8 337 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 SPICQ8N5J4 248 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 MIB2Q96AX9 1013 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 C20orf24Q9BUV8 137 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 SCPEP1Q9HB40 452 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 FRRS1LQ9P0K9 344 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 SULT1C2O00338 296 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 OGG1O15527 345 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 TXNL1O43396 289 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 GSTZ1O43708 216 aaPredicted RBP10.32□□□□□ -0.76
LDLR-208ENST00000558518 TBX19O60806 448 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 MTRF1O75570 445 aaKnown RBP10.32□□□□□ -0.76
LDLR-208ENST00000558518 TACSTD2P09758 323 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 HOXD10P28358 340 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 CAPZA2P47755 286 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 DIO1P49895 249 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 ITPRIPL2Q3MIP1 535 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 SLC22A6Q4U2R8 563 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 ZNF658BQ4V348 819 aaPredicted RBP10.32□□□□□ -0.76
LDLR-208ENST00000558518 CCDC157Q569K6 752 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 GLYATL3Q5SZD4 288 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 MARCH3Q86UD3 253 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 SLC35F3Q8IY50 421 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 DCUN1D4Q92564 292 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 WBP1Q96G27 269 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 SPACA5Q96QH8 159 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 CENPMQ9NSP4 180 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 GRHPRQ9UBQ7 328 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 NPTNQ9Y639 398 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 ARPC4-TTLL3A0A0A6YYG9 625 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 A0A1W2PQU0 124 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 OR6C76A6NM76 312 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 GLSO94925 669 aaPredicted RBP10.32□□□□□ -0.76
LDLR-208ENST00000558518 RAB40ALP0C0E4 278 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 CNR1P21554 472 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 ITGA3P26006 1051 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 CEBPGP53567 150 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 ALKBH1Q13686 389 aaKnown RBP10.32□□□□□ -0.76
LDLR-208ENST00000558518 FCRL6Q6DN72 434 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 RPL13AP3Q6NVV1 102 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 GVQW1Q8N7I0 195 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 RAB40AQ8WXH6 277 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 ZBTB8AQ96BR9 441 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.32□□□□□ -0.76
LDLR-208ENST00000558518 MBD2Q9UBB5 411 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 STEAP1Q9UHE8 339 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 KCNG2Q9UJ96 466 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 EYSQ5T1H1 3165 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 GGT3PA6NGU5 568 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 FBXO24O75426 580 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 HPP00738 406 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 S100A10P60903 97 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 AIMP2Q13155 320 aaKnown RBP10.32□□□□□ -0.76
LDLR-208ENST00000558518 TGIF1Q15583 401 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 TMPRSS11FQ6ZWK6 438 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 RNF113BQ8IZP6 322 aaKnown RBP10.32□□□□□ -0.76
LDLR-208ENST00000558518 OR9A4Q8NGU2 314 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 OR4C3Q8NH37 302 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 FAM3DQ96BQ1 224 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 LINC00615Q96LM1 132 aaPredicted RBP10.32□□□□□ -0.76
LDLR-208ENST00000558518 GAL3ST4Q96RP7 486 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 MENTQ9BUN1 341 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 FGF22Q9HCT0 170 aa10.32□□□□□ -0.76
LDLR-208ENST00000558518 MTCL1Q9Y4B5 1905 aaKnown RBP10.32□□□□□ -0.76
LDLR-208ENST00000558518 AGR2O95994 175 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 SPP1P10451 314 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 ST6GAL1P15907 406 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 PDZK1IP1Q13113 114 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 SNTB1Q13884 538 aaKnown RBP10.31□□□□□ -0.76
LDLR-208ENST00000558518 ZNF77Q15935 545 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 GABRG1Q8N1C3 465 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 OR2L13Q8N349 312 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 CDRT4Q8N9R6 151 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 NUBPLQ8TB37 319 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 HERVK_113Q902F9 699 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 RSPRY1Q96DX4 576 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 AMELYQ99218 206 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 SELENOIQ9C0D9 397 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 ELOVL3Q9HB03 270 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 DAPP1Q9UN19 280 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 DTX4Q9Y2E6 619 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 TRBV23-1A0A0A0MS06 115 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 MED19A0JLT2 244 aaPredicted RBP10.31□□□□□ -0.76
LDLR-208ENST00000558518 ZNF736B4DX44 427 aaPredicted RBP10.31□□□□□ -0.76
LDLR-208ENST00000558518 APBB3O95704 486 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 ITGA5P08648 1049 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 CSF1P09603 554 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 CSF2RBP32927 897 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 SNRPEP62304 92 aaKnown RBP10.31□□□□□ -0.76
LDLR-208ENST00000558518 IL13RA1P78552 427 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 BAMBIQ13145 260 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 SLC9A3R2Q15599 337 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 RAB11BQ15907 218 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 PLEKHN1Q494U1 663 aaPredicted RBP10.31□□□□□ -0.76
LDLR-208ENST00000558518 ETV3LQ6ZN32 361 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 HSD17B13Q7Z5P4 300 aaPredicted RBP10.31□□□□□ -0.76
LDLR-208ENST00000558518 LDLRAD3Q86YD5 345 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 OR2L8Q8NGY9 312 aa10.31□□□□□ -0.76
LDLR-208ENST00000558518 CCDC107Q8WV48 283 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms