RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 AFF3P51826 1226 aaKnown RBP6.58□□□□□ -1.36
VPS13C-206ENST00000558338 ART1P52961 327 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 SLC26A5P58743 744 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 BPIFB3P59826 476 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 NANOS3P60323 173 aaKnown RBP6.58□□□□□ -1.36
VPS13C-206ENST00000558338 RPL27P61353 136 aaKnown RBP6.58□□□□□ -1.36
VPS13C-206ENST00000558338 ZP2Q05996 745 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 LTBQ06643 244 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 SNTB2Q13425 540 aaKnown RBP6.58□□□□□ -1.36
VPS13C-206ENST00000558338 FAM209AQ5JX71 171 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 PLA2G2CQ5R387 149 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 ELFN2Q5R3F8 820 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 SLC18B1Q6NT16 456 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 FAM199XQ6PEV8 388 aaPredicted RBP6.58□□□□□ -1.36
VPS13C-206ENST00000558338 DNM1P34Q6PK57 102 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 STAC2Q6ZMT1 411 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF782Q6ZMW2 699 aaPredicted RBP6.58□□□□□ -1.36
VPS13C-206ENST00000558338 CREB3L2Q70SY1 520 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 PRR22Q8IZ63 422 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 CMTM4Q8IZR5 234 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 SLC7A5P1Q8MH63 180 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF433Q8N7K0 673 aaPredicted RBP6.58□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF676Q8N7Q3 588 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF441Q8N8Z8 693 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF511Q8NB15 262 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 OTOSQ8NHW6 89 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 FCAMRQ8WWV6 532 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 RGP1Q92546 391 aaPredicted RBP6.58□□□□□ -1.36
VPS13C-206ENST00000558338 MIB2Q96AX9 1013 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 HAVCR1Q96D42 359 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 MAP6Q96JE9 813 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 DPYSL5Q9BPU6 564 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 SLC25A18Q9H1K4 315 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 OR51J1Q9H342 316 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 GHITMQ9H3K2 345 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF768Q9H5H4 540 aaKnown RBP6.58□□□□□ -1.36
VPS13C-206ENST00000558338 LIN7BQ9HAP6 207 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 TAS2R10Q9NYW0 307 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 VSX1Q9NZR4 365 aaPredicted RBP6.58□□□□□ -1.36
VPS13C-206ENST00000558338 DHCR7Q9UBM7 475 aaKnown RBP6.58□□□□□ -1.36
VPS13C-206ENST00000558338 CLEC4AQ9UMR7 237 aa6.58□□□□□ -1.36
VPS13C-206ENST00000558338 MRPS7Q9Y2R9 242 aaKnown RBP6.58□□□□□ -1.36
VPS13C-206ENST00000558338 TRAV6A0A075B6T7 132 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 TRBV5-7A0A0A0MS05 114 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 TMED7-TICAM2A0A0A6YYA0 188 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 PRSS37A4D1T9 235 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 A6NIZ1 184 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 NPIPB13A6NJU9 1138 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 FAM171A2A8MVW0 826 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 NPIPB4C9JG80 1138 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 ACOT7O00154 380 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 GPR171O14626 319 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 BCAT2O15382 392 aaPredicted RBP6.57□□□□□ -1.36
VPS13C-206ENST00000558338 KHDRBS3O75525 346 aaKnown RBP6.57□□□□□ -1.36
VPS13C-206ENST00000558338 SNAPC5O75971 98 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 RPP14O95059 124 aaKnown RBP6.57□□□□□ -1.36
VPS13C-206ENST00000558338 GIFP27352 417 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 CRABP1P29762 137 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 FAUP35544 74 aaKnown RBP6.57□□□□□ -1.36
VPS13C-206ENST00000558338 SRP9P49458 86 aaKnown RBP6.57□□□□□ -1.36
VPS13C-206ENST00000558338 CCR9P51686 369 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 STARD6P59095 220 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 RAP1BP61224 184 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 RAP1AP62834 184 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 DBPQ10586 325 aaPredicted RBP6.57□□□□□ -1.36
VPS13C-206ENST00000558338 BTBD16Q32M84 506 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 TMEM69Q5SWH9 247 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 HES5Q5TA89 166 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 FAM205BPQ63HN1 556 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 OLFML2AQ68BL7 652 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 KCTD18Q6PI47 426 aaPredicted RBP6.57□□□□□ -1.36
VPS13C-206ENST00000558338 RABEPKQ7Z6M1 372 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 MARCH3Q86UD3 253 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 OR6V1Q8N148 313 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 SPEM1Q8N4L4 309 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 ARL6IP6Q8N6S5 226 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 OR4D9Q8NGE8 314 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 OR2G2Q8NGZ5 317 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF519Q8TB69 540 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.57□□□□□ -1.36
VPS13C-206ENST00000558338 DNASE2BQ8WZ79 361 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 ST8SIA1Q92185 356 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 PHF21AQ96BD5 680 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 OR8B4Q96RC9 309 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 SLC7A5P2Q9GIP4 190 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 VN1R1Q9GZP7 353 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 SYT4Q9H2B2 425 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 TXNIPQ9H3M7 391 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 DIABLOQ9NR28 239 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 FRRS1LQ9P0K9 344 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 MKL2Q9ULH7 1088 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 KLHDC2Q9Y2U9 406 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 TMED7Q9Y3B3 224 aa6.57□□□□□ -1.36
VPS13C-206ENST00000558338 ADAMTS20P59510 1910 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 CEP192Q8TEP8 1941 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 A0A0B4J203 849 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 TVP23AA6NH52 213 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 A6NIN4 97 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 OR4C45A6NMZ5 311 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 FADS1O60427 444 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms