RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 PGA4P0DJD7 388 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 PGA3P0DJD8 388 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 RIN1Q13671 783 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 CCNIQ14094 377 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 MAD2L1BPQ15013 274 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-235ENST00000557740 FXNQ16595 210 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 RABL3Q5HYI8 236 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 NANOGP8Q6NSW7 305 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 TMEM53Q6P2H8 277 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 CCDC80Q76M96 950 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 DPPA2Q7Z7J5 298 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 TSPYL5Q86VY4 417 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-235ENST00000557740 CARM1Q86X55 608 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 LINC01356Q8N9X3 169 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 SLC30A7Q8NEW0 376 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 OR8J3Q8NGG0 315 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 SH3GL3Q99963 347 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 ECSITQ9BQ95 431 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 SOX7Q9BT81 388 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 TMEM120AQ9BXJ8 343 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 C1orf198Q9H425 327 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 NANOGQ9H9S0 305 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 CDH20Q9HBT6 801 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 MRGBPQ9NV56 204 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 BAG5Q9UL15 447 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 ZNF346Q9UL40 294 aaKnown RBP12.59□□□□□ -0.39
SHMT2-235ENST00000557740 FZR1Q9UM11 496 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 SH3GLB1Q9Y371 365 aa12.59□□□□□ -0.39
SHMT2-235ENST00000557740 YLPM1P49750 1951 aaKnown RBP12.58□□□□□ -0.4
SHMT2-235ENST00000557740 SLC22A23A1A5C7 686 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 LYNX1G3V0Z9 82 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 FBP2O00757 339 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 IFNA14P01570 189 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 QDPRP09417 244 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 LYNX1P0DP58 116 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 TROVE2P10155 538 aaKnown RBP eCLIP12.58□□□□□ -0.4
SHMT2-235ENST00000557740 TCN1P20061 433 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-235ENST00000557740 IL2RGP31785 369 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 GZMMP51124 257 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 DAP3P51398 398 aaKnown RBP12.58□□□□□ -0.4
SHMT2-235ENST00000557740 ZNF84P51523 738 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 CRYBA2P53672 197 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 TAS2R41P59536 307 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 SELENOVP59797 346 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 TRIP10Q15642 601 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 NKPD1Q17RQ9 610 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 SLC36A2Q495M3 483 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 MMEL1Q495T6 779 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 RGS7BPQ6MZT1 257 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-235ENST00000557740 LRFN4Q6PJG9 635 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 UGT2A3Q6UWM9 527 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 SLC16A14Q7RTX9 510 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 NOXO1Q8NFA2 376 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 OR4K5Q8NGD3 323 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 PFN4Q8NHR9 129 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 FGFBP3Q8TAT2 258 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 PRSS27Q9BQR3 290 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 POLR2J2Q9GZM3 115 aaKnown RBP12.58□□□□□ -0.4
SHMT2-235ENST00000557740 POLR2J3Q9H1A7 115 aaKnown RBP12.58□□□□□ -0.4
SHMT2-235ENST00000557740 DUSP13Q9UII6 198 aa12.58□□□□□ -0.4
SHMT2-235ENST00000557740 BBIP1A8MTZ0 92 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 MRASO14807 208 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 OR7A10O76100 309 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 OR5F1O95221 314 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 MT-ND1P03886 318 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 F13BP05160 661 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 FAM157BP0CG42 384 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 TNFRSF1BP20333 461 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 SRP14P37108 136 aaKnown RBP12.57□□□□□ -0.4
SHMT2-235ENST00000557740 RBM34P42696 430 aaKnown RBP12.57□□□□□ -0.4
SHMT2-235ENST00000557740 GPR6P46095 362 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-235ENST00000557740 SEC24CP53992 1094 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 CDH15P55291 814 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 MYBPC1Q00872 1141 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 PLP2Q04941 152 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 RPL18Q07020 188 aaKnown RBP12.57□□□□□ -0.4
SHMT2-235ENST00000557740 MAPRE2Q15555 327 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 TBC1D28Q2M2D7 210 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 KRTAP24-1Q3LI83 254 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 COQ5Q5HYK3 327 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 ERICH5Q6P6B1 374 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 LRP11Q86VZ4 500 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 ZNF584Q8IVC4 421 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 RBM15BQ8NDT2 890 aaKnown RBP12.57□□□□□ -0.4
SHMT2-235ENST00000557740 TMEM255BQ8WV15 326 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 RDH5Q92781 318 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 LRRC58Q96CX6 371 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 SGTBQ96EQ0 304 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 MEPEQ9NQ76 525 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-235ENST00000557740 INIPQ9NRY2 104 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 MYEF2Q9P2K5 600 aaKnown RBP12.57□□□□□ -0.4
SHMT2-235ENST00000557740 STX18Q9P2W9 335 aaKnown RBP12.57□□□□□ -0.4
SHMT2-235ENST00000557740 GPR160Q9UJ42 338 aa12.57□□□□□ -0.4
SHMT2-235ENST00000557740 IQCMA0A1B0GVH7 501 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 CENPBD1B2RD01 187 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 FXYD1O00168 92 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 PTHP01270 115 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 HPXP02790 462 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 PCMT1P22061 227 aa12.56□□□□□ -0.4
SHMT2-235ENST00000557740 ACHEP22303 614 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms