RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SGCZQ96LD1 299 aa23.64■■□□□ 1.38
CCDC88C-205ENST00000553403 FOXJ2Q9P0K8 574 aa23.64■■□□□ 1.38
CCDC88C-205ENST00000553403 TRAV1-2A0A0B4J238 106 aa23.64■■□□□ 1.37
CCDC88C-205ENST00000553403 CENPBD1B2RD01 187 aa23.64■■□□□ 1.37
CCDC88C-205ENST00000553403 ABHD16AO95870 558 aa23.64■■□□□ 1.37
CCDC88C-205ENST00000553403 KRT8P05787 483 aa23.64■■□□□ 1.37
CCDC88C-205ENST00000553403 DNASE1L3Q13609 305 aa23.64■■□□□ 1.37
CCDC88C-205ENST00000553403 DNM1P34Q6PK57 102 aa23.64■■□□□ 1.37
CCDC88C-205ENST00000553403 UNQ9370/PRO34162Q6UXP9 181 aa23.64■■□□□ 1.37
CCDC88C-205ENST00000553403 KDM8Q8N371 416 aa23.64■■□□□ 1.37
CCDC88C-205ENST00000553403 GTPBP8Q8N3Z3 284 aaPredicted RBP23.64■■□□□ 1.37
CCDC88C-205ENST00000553403 OTOSQ8NHW6 89 aa23.64■■□□□ 1.37
CCDC88C-205ENST00000553403 RNF166Q96A37 237 aaPredicted RBP23.64■■□□□ 1.37
CCDC88C-205ENST00000553403 FAM117AQ9C073 453 aa23.64■■□□□ 1.37
CCDC88C-205ENST00000553403 HDGFL3Q9Y3E1 203 aa23.64■■□□□ 1.37
CCDC88C-205ENST00000553403 UPK3AO75631 287 aa23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 ARL6IP5O75915 188 aa23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 SERPINA7P05543 415 aa23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 OR8G3PP0DMU2 310 aa23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 IFNGR1P15260 489 aa23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 RPS11P62280 158 aaKnown RBP eCLIP23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 Q0VFX4 171 aa23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 HBMQ6B0K9 141 aa23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 DPY19L4Q7Z388 723 aa23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 ASB17Q8WXJ9 295 aa23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 ABTB1Q969K4 478 aaPredicted RBP23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 KCTD12Q96CX2 325 aaKnown RBP23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 TMEM41AQ96HV5 264 aa23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 GPR87Q9BY21 358 aa23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 RPH3AQ9Y2J0 694 aaPredicted RBP23.63■■□□□ 1.37
CCDC88C-205ENST00000553403 C21orf140B9A014 251 aa23.62■■□□□ 1.37
CCDC88C-205ENST00000553403 SEC14L5O43304 696 aa23.62■■□□□ 1.37
CCDC88C-205ENST00000553403 LIFP15018 202 aa23.62■■□□□ 1.37
CCDC88C-205ENST00000553403 CTLA4P16410 223 aa23.62■■□□□ 1.37
CCDC88C-205ENST00000553403 DSCR4P56555 118 aaPredicted RBP23.62■■□□□ 1.37
CCDC88C-205ENST00000553403 ZNF239Q16600 458 aaKnown RBP23.62■■□□□ 1.37
CCDC88C-205ENST00000553403 YIPF7Q8N8F6 280 aa23.62■■□□□ 1.37
CCDC88C-205ENST00000553403 OR13C5Q8NGS8 318 aa23.62■■□□□ 1.37
CCDC88C-205ENST00000553403 KIAA1143Q96AT1 154 aaPredicted RBP23.62■■□□□ 1.37
CCDC88C-205ENST00000553403 DIRAS2Q96HU8 199 aa23.62■■□□□ 1.37
CCDC88C-205ENST00000553403 KCNK17Q96T54 332 aa23.62■■□□□ 1.37
CCDC88C-205ENST00000553403 MFRPQ9BY79 579 aa23.62■■□□□ 1.37
CCDC88C-205ENST00000553403 ZNF281Q9Y2X9 895 aa23.62■■□□□ 1.37
CCDC88C-205ENST00000553403 PSMD9O00233 223 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 PFDN1O60925 122 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 GPANK1O95872 356 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 HLA-DQA2P01906 255 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 UCHL1P09936 223 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 POU3F1Q03052 451 aaPredicted RBP23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 FAM27D1Q5T7N8 215 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 LIPNQ5VXI9 398 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 XKRXQ6PP77 449 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 SLC22A16Q86VW1 577 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 OR5M1Q8NGP8 315 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 OR1J4Q8NGS1 313 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 TTYH2Q9BSA4 534 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 SRRQ9GZT4 340 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 SP140LQ9H930 580 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 SACM1LQ9NTJ5 587 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 P4HTMQ9NXG6 502 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 COMMD3Q9UBI1 195 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 ADAM30Q9UKF2 790 aa23.61■■□□□ 1.37
CCDC88C-205ENST00000553403 MASP2O00187 686 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 ZNF593O00488 134 aaPredicted RBP23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 DPP4P27487 766 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 OR2B6P58173 313 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 ALKBH1Q13686 389 aaKnown RBP23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 ZNF79Q15937 498 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 YIF1BQ5BJH7 314 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 DHRS13Q6UX07 377 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 NHLRC1Q6VVB1 395 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 NR2C2APQ86WQ0 139 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 THEM6Q8WUY1 208 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 OR5B2Q96R09 309 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 TSPAN10Q9H1Z9 355 aaPredicted RBP23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 MRPL22Q9NWU5 206 aaKnown RBP23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 DMXL1Q9Y485 3027 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 FABP12A6NFH5 140 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 TCEA1P23193 301 aaKnown RBP23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 NANOS3P60323 173 aaKnown RBP23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 FOXK1P85037 733 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 GLO1Q04760 184 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 HES3Q5TGS1 186 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 TIGD3Q6B0B8 471 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 METAP1DQ6UB28 335 aaPredicted RBP23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 FAM131AQ6UXB0 335 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 PDCD1LG2Q9BQ51 273 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 B3GAT1Q9P2W7 334 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 IKZF2Q9UKS7 526 aa23.6■■□□□ 1.37
CCDC88C-205ENST00000553403 TERTO14746 1132 aaKnown RBP23.59■■□□□ 1.37
CCDC88C-205ENST00000553403 SLC19A2O60779 497 aa23.59■■□□□ 1.37
CCDC88C-205ENST00000553403 PTBP1P26599 531 aaKnown RBP eCLIP23.59■■□□□ 1.37
CCDC88C-205ENST00000553403 PTGS2P35354 604 aa23.59■■□□□ 1.37
CCDC88C-205ENST00000553403 P2RY4P51582 365 aa23.59■■□□□ 1.37
CCDC88C-205ENST00000553403 DEFA1P59665 94 aa23.59■■□□□ 1.37
CCDC88C-205ENST00000553403 DEFA3P59666 94 aa23.59■■□□□ 1.37
CCDC88C-205ENST00000553403 SLC18B1Q6NT16 456 aa23.59■■□□□ 1.37
CCDC88C-205ENST00000553403 ZNF454Q8N9F8 522 aa23.59■■□□□ 1.37
CCDC88C-205ENST00000553403 POC5Q8NA72 575 aa23.59■■□□□ 1.37
CCDC88C-205ENST00000553403 DLL3Q9NYJ7 618 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 155.2 ms