RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ZNF385BQ569K4 471 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 RPS26P11Q5JNZ5 115 aaPredicted RBP6.96□□□□□ -1.29
LIMA1-216ENST00000552909 AVPI1Q5T686 147 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 HES5Q5TA89 166 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 CDC73Q6P1J9 531 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF613Q6PF04 617 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF322Q6U7Q0 402 aaPredicted RBP6.96□□□□□ -1.29
LIMA1-216ENST00000552909 UBE3DQ7Z6J8 389 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 HORMAD2Q8N7B1 307 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 RELL2Q8NC24 303 aaPredicted RBP6.96□□□□□ -1.29
LIMA1-216ENST00000552909 C16orf78Q8WTQ4 265 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 SMIM4Q8WVI0 70 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 RERGQ96A58 199 aaPredicted RBP6.96□□□□□ -1.29
LIMA1-216ENST00000552909 TM4SF19Q96DZ7 209 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 MRPL48Q96GC5 212 aaKnown RBP6.96□□□□□ -1.29
LIMA1-216ENST00000552909 NIT2Q9NQR4 276 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 CAMK2AQ9UQM7 478 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 GCN1Q92616 2671 aaKnown RBP6.96□□□□□ -1.3
LIMA1-216ENST00000552909 A0A0A6YYC8 382 aaPredicted RBP6.96□□□□□ -1.3
LIMA1-216ENST00000552909 NAP1L6A6NFF2 107 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 SNRPGP15A8MWD9 76 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 I3L1I5 382 aaPredicted RBP6.96□□□□□ -1.3
LIMA1-216ENST00000552909 CTDSPLO15194 276 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 SC5DO75845 299 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 HTR3BO95264 441 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 IGF2P01344 180 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 UMODP07911 640 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 GSTM3P21266 225 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 MST1P26927 711 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 PRKAR1BP31321 381 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 BSGP35613 385 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 ATP6V1E1P36543 226 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 GDNFP39905 211 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 GPR143P51810 404 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 TAS2R50P59544 299 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 GMFBP60983 142 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 RPS15AP62244 130 aaKnown RBP6.96□□□□□ -1.3
LIMA1-216ENST00000552909 MC1RQ01726 317 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 BDH1Q02338 343 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 CHAF1BQ13112 559 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 TMEM44Q2T9K0 475 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 VWA2Q5GFL6 755 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 ELFN2Q5R3F8 820 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 FAM74A1Q5RGS3 127 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF626Q68DY1 528 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 ELP2Q6IA86 826 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 OR4C11Q6IEV9 310 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 PODNL1Q6PEZ8 512 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 UQCC3Q6UW78 93 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 NHLRC1Q6VVB1 395 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 OVCH1Q7RTY7 1134 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 JAZF1Q86VZ6 243 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 CBLN2Q8IUK8 224 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 PRSS58Q8IYP2 241 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 PUSL1Q8N0Z8 303 aaKnown RBP6.96□□□□□ -1.3
LIMA1-216ENST00000552909 LINC00471Q8N535 108 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 AMER3Q8N944 861 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 DMBX1Q8NFW5 382 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 GPR32P1Q8NGA4 272 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 OR4K5Q8NGD3 323 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 OR6K3Q8NGY3 331 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 HAVCR2Q8TDQ0 301 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 ELP5Q8TE02 316 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 ADAMTS17Q8TE56 1095 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 THAP4Q8WY91 577 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 PNPLA2Q96AD5 504 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 AICDAQ9GZX7 198 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 OR51M1Q9H341 326 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 ANKRD19PQ9H560 264 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 REEP4Q9H6H4 257 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 AUNIPQ9H7T9 357 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 HRASLSQ9HDD0 168 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 KLHL1Q9NR64 748 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 RCE1Q9Y256 329 aa6.96□□□□□ -1.3
LIMA1-216ENST00000552909 PTRH2Q9Y3E5 179 aaKnown RBP6.96□□□□□ -1.3
LIMA1-216ENST00000552909 A0A0G2JK05 382 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 C9J4A7 227 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ATXN7O15265 892 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ERI3O43414 337 aaKnown RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 DNAJB6O75190 326 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ONECUT2O95948 504 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 IGHA1P01876 353 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ITGB2P05107 769 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 BCHEP06276 602 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 UBBP0CG47 229 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 UBCP0CG48 685 aaKnown RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 SAGP10523 405 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 EFNA3P52797 238 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 DLX5P56178 289 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 AP3S2P59780 193 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 RPS27AP62979 156 aaKnown RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 UBA52P62987 128 aaKnown RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 MAT1AQ00266 395 aaKnown RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF763Q0D2J5 394 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 SNTB1Q13884 538 aaKnown RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 MELKQ14680 651 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 SLC25A35Q3KQZ1 300 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 TMEM35AQ53FP2 167 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 TMEM255AQ5JRV8 349 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ENTPD8Q5MY95 495 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms