RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 RENP00797 406 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 HRGP04196 525 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 PRR23D2P0DMB1 279 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-211ENST00000552338 PAICSP22234 425 aaKnown RBP8.47□□□□□ -1.05
LIMA1-211ENST00000552338 CTSSP25774 331 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 HTR1FP30939 366 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 SELENOPP49908 381 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 GGTLC2Q14390 218 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 MELKQ14680 651 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 HSPB2Q16082 182 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 KCNMB1Q16558 191 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 PCK2Q16822 640 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 SOWAHCQ53LP3 525 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-211ENST00000552338 C6orf141Q5SZD1 244 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 SLC35F1Q5T1Q4 408 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 LRFN4Q6PJG9 635 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 AAED1Q7RTV5 226 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 P4HA3Q7Z4N8 544 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 JAZF1Q86VZ6 243 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 CPOQ8IVL8 374 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 GID4Q8IVV7 300 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 MCEMP1Q8IX19 187 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 OR6V1Q8N148 313 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 ZNF843Q8N446 348 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 OR2T4Q8NH00 348 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 MCHR2Q969V1 340 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 STARD4Q96DR4 205 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 SIGLEC11Q96RL6 698 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 TEAD3Q99594 435 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 WACQ9BTA9 647 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 EMC6Q9BV81 110 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 SFXN3Q9BWM7 321 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 SLCO5A1Q9H2Y9 848 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 FKBP14Q9NWM8 211 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 IMPAD1Q9NX62 359 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 UBAP1Q9NZ09 502 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 JKAMPQ9P055 326 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 MALT1Q9UDY8 824 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 WARS2Q9UGM6 360 aaKnown RBP8.47□□□□□ -1.05
LIMA1-211ENST00000552338 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.47□□□□□ -1.05
LIMA1-211ENST00000552338 B9D1Q9UPM9 204 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 MEMO1Q9Y316 297 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 CCDC182A6NF36 153 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 SLC22A31A6NKX4 558 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 SNTNA6NMZ2 147 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 DCTN6O00399 190 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 MRPS14O60783 128 aaKnown RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 C1QL1O75973 258 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 GLCEO94923 617 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 PLGP00747 810 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 TMIGD3P0DMS9 266 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 PIPP12273 146 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 SPI1P17947 270 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 CASP6P55212 293 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 TOP3AQ13472 1001 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 CAMK2DQ13557 499 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 TEX30Q5JUR7 227 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 RBM48Q5RL73 367 aaKnown RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 RNLSQ5VYX0 342 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 NIPAL3Q6P499 406 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 LEG1Q6P5S2 330 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 DNM1P34Q6PK57 102 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 TFAP2EQ6VUC0 442 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 MEPCEQ7L2J0 689 aaKnown RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 CXXC5Q7LFL8 322 aaKnown RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 NUFIP2Q7Z417 695 aaKnown RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 ABHD12BQ7Z5M8 362 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 ATCAYQ86WG3 371 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 NAXEQ8NCW5 288 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 SDR9C7Q8NEX9 313 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 KISS1RQ969F8 398 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 RFKQ969G6 155 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 PLEKHA8Q96JA3 519 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF582Q96NG8 517 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 NR1H4Q96RI1 486 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 JAM3Q9BX67 310 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 HCAR1Q9BXC0 346 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 NUAK2Q9H093 628 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 SYT4Q9H2B2 425 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 PIGMQ9H3S5 423 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 DUSP21Q9H596 190 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 CLN6Q9NWW5 311 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 CNOT2Q9NZN8 540 aaKnown RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 EXOGQ9Y2C4 368 aaKnown RBP8.46□□□□□ -1.06
LIMA1-211ENST00000552338 EMC9Q9Y3B6 208 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 EPG5Q9HCE0 2579 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 PCNX1Q96RV3 2341 aa8.46□□□□□ -1.06
LIMA1-211ENST00000552338 ITPR1Q14643 2758 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 IGKV1D-43A0A0B4J1Z2 117 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 A0A1B0GUH1 482 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 J3QRE1 110 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 MSTNO14793 375 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 DHHO43323 396 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 KHDRBS3O75525 346 aaKnown RBP8.45□□□□□ -1.06
LIMA1-211ENST00000552338 QDPRP09417 244 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 CTLA4P16410 223 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 NPR2P20594 1047 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 COX5AP20674 150 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 AGAP20933 346 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 CRHBPP24387 322 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms