RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 ARL6IP1Q15041 203 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 KLF17Q5JT82 389 aaPredicted RBP3.47□□□□□ -1.85
LIMA1-205ENST00000550592 LCE1EQ5T753 118 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 UNQ9370/PRO34162Q6UXP9 181 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 ARCQ7LC44 396 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 BBS1Q8NFJ9 593 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 ANKRD49Q8WVL7 239 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 C16orf74Q96GX8 76 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 PGLYRP4Q96LB8 373 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 MAGEB18Q96M61 343 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 RBM14Q96PK6 669 aaKnown RBP3.47□□□□□ -1.85
LIMA1-205ENST00000550592 NPAS2Q99743 824 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 NICN1Q9BSH3 213 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 YTHDF1Q9BYJ9 559 aaKnown RBP3.47□□□□□ -1.85
LIMA1-205ENST00000550592 MAGT1Q9H0U3 335 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 HEBP1Q9NRV9 189 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 MARCH5Q9NX47 278 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 COX16Q9P0S2 106 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 CDH9Q9ULB4 789 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 PI4KAP42356 2102 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 C2orf16Q68DN1 1984 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 FOCADQ5VW36 1801 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 NUP205Q92621 2012 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 SYNJ2BP-COX16A0A087WUM0 186 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 A0A0G2JRQ6 117 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 A0A1B0GUS0 222 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 PCP4L1A6NKN8 68 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 IDSB3KWA1 339 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 HAT1O14929 419 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 ZNF264O43296 627 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 HCRTR1O43613 425 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 AP2A1O95782 977 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 NDUFB10O96000 172 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 UQCRFS1P1P0C7P4 283 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 CCDC130P13994 396 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 ZBTB25P24278 435 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 CD52P31358 61 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 RPL13AP40429 203 aaKnown RBP3.46□□□□□ -1.86
LIMA1-205ENST00000550592 EOGTQ5NDL2 527 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 GDPD3Q7L5L3 318 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 EFL1Q7Z2Z2 1120 aaKnown RBP3.46□□□□□ -1.86
LIMA1-205ENST00000550592 TMEM179BQ7Z7N9 219 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 MFSD9Q8NBP5 474 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 BHLHE23Q8NDY6 225 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 MAIP1Q8WWC4 291 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 OR1E3Q8WZA6 343 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 ST8SIA1Q92185 356 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 UBE2E3Q969T4 207 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 ZBTB18Q99592 522 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 GAL3ST1Q99999 423 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 ZDHHC11Q9H8X9 412 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 NAP1L2Q9ULW6 460 aaPredicted RBP3.46□□□□□ -1.86
LIMA1-205ENST00000550592 ADAMTS9Q9P2N4 1935 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 ZFHX3Q15911 3703 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 MED13LQ71F56 2210 aa3.46□□□□□ -1.86
LIMA1-205ENST00000550592 NOTCH3Q9UM47 2321 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 NAV1Q8NEY1 1877 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 TLN1Q9Y490 2541 aaKnown RBP3.45□□□□□ -1.86
LIMA1-205ENST00000550592 ITPR2Q14571 2701 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 COL5A1P20908 1838 aaPredicted RBP3.45□□□□□ -1.86
LIMA1-205ENST00000550592 M0QZ92 97 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 HDAC3O15379 428 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 NBR2O15453 112 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 HLA-EP13747 358 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 ANXA13P27216 316 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 DUSP3P51452 185 aaPredicted RBP3.45□□□□□ -1.86
LIMA1-205ENST00000550592 CRYBB1P53674 252 aaPredicted RBP3.45□□□□□ -1.86
LIMA1-205ENST00000550592 BIDP55957 195 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 KRTAP10-5P60370 271 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 MGAT3Q09327 533 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 GRB7Q14451 532 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 C11orf71Q6IPW1 123 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 ZNF544Q6NX49 715 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 SCARA5Q6ZMJ2 495 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 FAM220AQ7Z4H9 259 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 TMEM252Q8N6L7 170 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 OR2AP1Q8NGE2 309 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 SCFD1Q8WVM8 642 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 RAPGEF5Q92565 580 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 RPRD1AQ96P16 312 aaPredicted RBP3.45□□□□□ -1.86
LIMA1-205ENST00000550592 TECTBQ96PL2 329 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 SLC38A2Q96QD8 506 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 FN3KRPQ9HA64 309 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 CD274Q9NZQ7 290 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 NYAP2Q9P242 653 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 ADAM28Q9UKQ2 775 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 ABCG2Q9UNQ0 655 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 PTPRBP23467 1997 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 NBASA2RRP1 2371 aa3.45□□□□□ -1.86
LIMA1-205ENST00000550592 FN1P02751 2386 aaKnown RBP3.45□□□□□ -1.86
LIMA1-205ENST00000550592 MTORP42345 2549 aa3.44□□□□□ -1.86
LIMA1-205ENST00000550592 DCTN6O00399 190 aa3.44□□□□□ -1.86
LIMA1-205ENST00000550592 POLR2DO15514 142 aaKnown RBP3.44□□□□□ -1.86
LIMA1-205ENST00000550592 FCMRO60667 390 aa3.44□□□□□ -1.86
LIMA1-205ENST00000550592 RAMP3O60896 148 aa3.44□□□□□ -1.86
LIMA1-205ENST00000550592 SNAPINO95295 136 aa3.44□□□□□ -1.86
LIMA1-205ENST00000550592 LGI1O95970 557 aa3.44□□□□□ -1.86
LIMA1-205ENST00000550592 NCK1P16333 377 aa3.44□□□□□ -1.86
LIMA1-205ENST00000550592 GNA11P29992 359 aa3.44□□□□□ -1.86
LIMA1-205ENST00000550592 CALCRP30988 508 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms