RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	SEC14L4	Q9UDX3	406 aa		6.7	□□□□□ -1.34
SNHG1-223	ENST00000545440	CAPN7	Q9Y6W3	813 aa		6.7	□□□□□ -1.34
SNHG1-223	ENST00000545440	RTTN	Q86VV8	2226 aa		6.7	□□□□□ -1.34
SNHG1-223	ENST00000545440	HIVEP2	P31629	2446 aa		6.7	□□□□□ -1.34
SNHG1-223	ENST00000545440		A0A0A6YYJ9	748 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	TRAPPC13	A5PLN9	417 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	TRIM64	A6NGJ6	449 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	TRIM64B	A6NI03	449 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	CPSF4L	A6NMK7	179 aa	Known RBP	6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	FAM220BP	B1ANY3	271 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440		H7C1Q1	480 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	UPK3A	O75631	287 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	TSPAN15	O95858	294 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	HPR	P00739	348 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	HEXA	P06865	529 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	TTK	P33981	857 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	UBE2N	P61088	152 aa	Known RBP	6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	ROR2	Q01974	943 aa	Known RBP	6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	POU3F1	Q03052	451 aa	Predicted RBP	6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	LGALS3BP	Q08380	585 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	PUDP	Q08623	228 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	KRTAP21-3	Q3LHN1	58 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	HIKESHI	Q53FT3	197 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	ENTPD8	Q5MY95	495 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	C11orf71	Q6IPW1	123 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	ANKRD16	Q6P6B7	361 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	B3GLCT	Q6Y288	498 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	LINGO2	Q7L985	606 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	ARPIN	Q7Z6K5	226 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	UEVLD	Q8IX04	471 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	TMEM123	Q8N131	208 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	KDM8	Q8N371	416 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	GPR137C	Q8N3F9	429 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	PIK3C3	Q8NEB9	887 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	VANGL1	Q8TAA9	524 aa	Predicted RBP	6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	SLC26A7	Q8TE54	656 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	C10orf82	Q8WW14	230 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	PROX1	Q92786	737 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	MPP4	Q96JB8	637 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	MOGAT1	Q96PD6	335 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	OR2M2	Q96R28	347 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	ECSIT	Q9BQ95	431 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	ADI1	Q9BV57	179 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	POLR2J2	Q9GZM3	115 aa	Known RBP	6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	POLR2J3	Q9H1A7	115 aa	Known RBP	6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	NELFA	Q9H3P2	528 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	CBLN4	Q9NTU7	201 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	GID8	Q9NWU2	228 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	CRNN	Q9UBG3	495 aa	Predicted RBP	6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	POU2F3	Q9UKI9	436 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	BAG5	Q9UL15	447 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	NOX1	Q9Y5S8	564 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	ZAN	Q9Y493	2812 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	MALRD1	Q5VYJ5	2156 aa		6.69	□□□□□ -1.34
SNHG1-223	ENST00000545440	ZNF99	A8MXY4	864 aa	Predicted RBP	6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440		E7EQL1	145 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	ATP6V1G2-DDX39B	F2Z307	99 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	MS4A18	H0YCH9	400 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440		H7C417	338 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	LYPD3	O95274	346 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	KNG1	P01042	644 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	IFNA14	P01570	189 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	IGKV3-15	P01624	115 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	IGLV1-44	P01699	117 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	CD8A	P01732	235 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	IGHV4-39	P01824	125 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	THY1	P04216	161 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	CDH2	P19022	906 aa	Predicted RBP	6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	CDKN1A	P38936	164 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	MDH1	P40925	334 aa	Known RBP	6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	IL1RL1	Q01638	556 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	LTB	Q06643	244 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	PMS2P3	Q13401	168 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	ZNF74	Q16587	644 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	MS4A18	Q3C1V0	323 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	TTC33	Q6PID6	262 aa	Predicted RBP	6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	CLEC9A	Q6UXN8	241 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	WDR88	Q6ZMY6	472 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	DNM1P46	Q6ZS02	220 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	PXK	Q7Z7A4	578 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	CCDC36	Q8IYA8	594 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	FBXL14	Q8N1E6	418 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	CIART	Q8N365	385 aa	Predicted RBP	6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	MUC15	Q8N387	334 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	OR2T12	Q8NG77	320 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	OR4D11	Q8NGI4	311 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	OR5J2	Q8NH18	312 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	RP9	Q8TA86	221 aa	Known RBP	6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	BCL2L2	Q92843	193 aa	Predicted RBP	6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	LRR1	Q96L50	414 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	HS6ST2	Q96MM7	605 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	SLC38A2	Q96QD8	506 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	SMR3A	Q99954	134 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	KATNB1	Q9BVA0	655 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	CRLF2	Q9HC73	371 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	GPR35	Q9HC97	309 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	ARMCX1	Q9P291	453 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	ZNF229	Q9UJW7	825 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	SLC7A7	Q9UM01	511 aa		6.68	□□□□□ -1.34
SNHG1-223	ENST00000545440	AP3M1	Q9Y2T2	418 aa		6.68	□□□□□ -1.34

Retrieved 100 of 20,778 RNA–protein pairs in 37 ms