RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PGGHGQ32M88 737 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 PHYHD1Q5SRE7 291 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 THEM4Q5T1C6 240 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 ACSM5Q6NUN0 579 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 LRFN4Q6PJG9 635 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 LINGO2Q7L985 606 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 JAZF1Q86VZ6 243 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 IQCF1Q8N6M8 205 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 OR4K13Q8NH42 304 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 RNASE6Q93091 150 aaKnown RBP15.09■□□□□ 0.01
LIG1-204ENST00000542460 SNX18Q96RF0 628 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 ULBP2Q9BZM5 246 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 SLC25A19Q9HC21 320 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 CRLF2Q9HC73 371 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 GPR35Q9HC97 309 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 SLC22A23A1A5C7 686 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 HMGN1P05114 100 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 QDPRP09417 244 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 IGHV1-2P23083 117 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 MPGP29372 298 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 CDKN2AP42771 156 aaKnown RBP15.08■□□□□ 0.01
LIG1-204ENST00000542460 FAM27E3Q08E93 113 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 TMEM236Q5W0B7 351 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 PTCHD4Q6ZW05 846 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 CXorf67Q86X51 503 aaPredicted RBP15.08■□□□□ 0.01
LIG1-204ENST00000542460 GALNT4Q8N4A0 578 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 OR52E2Q8NGJ4 325 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 MCHR2Q969V1 340 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 HDHD5Q9BXW7 423 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 RIBC2Q9H4K1 309 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 TAS2R16Q9NYV7 291 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 VSX1Q9NZR4 365 aaPredicted RBP15.08■□□□□ 0.01
LIG1-204ENST00000542460 KLHL21Q9UJP4 597 aa15.08■□□□□ 0.01
LIG1-204ENST00000542460 USP9XQ93008 2570 aaPredicted RBP15.08■□□□□ 0
LIG1-204ENST00000542460 H7C1C5 153 aa15.07■□□□□ 0
LIG1-204ENST00000542460 IFNGP01579 166 aa15.07■□□□□ 0
LIG1-204ENST00000542460 PSMB1P20618 241 aaKnown RBP15.07■□□□□ 0
LIG1-204ENST00000542460 COX5AP20674 150 aa15.07■□□□□ 0
LIG1-204ENST00000542460 EPHA2P29317 976 aa15.07■□□□□ 0
LIG1-204ENST00000542460 POLR2IP36954 125 aaKnown RBP15.07■□□□□ 0
LIG1-204ENST00000542460 LCN6P62502 163 aa15.07■□□□□ 0
LIG1-204ENST00000542460 TGFBR3Q03167 851 aa15.07■□□□□ 0
LIG1-204ENST00000542460 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.07■□□□□ 0
LIG1-204ENST00000542460 STK11Q15831 433 aa15.07■□□□□ 0
LIG1-204ENST00000542460 CEACAM16Q2WEN9 425 aa15.07■□□□□ 0
LIG1-204ENST00000542460 ZNF362Q5T0B9 420 aaPredicted RBP15.07■□□□□ 0
LIG1-204ENST00000542460 SFRP5Q5T4F7 317 aa15.07■□□□□ 0
LIG1-204ENST00000542460 LEG1Q6P5S2 330 aa15.07■□□□□ 0
LIG1-204ENST00000542460 STAC2Q6ZMT1 411 aa15.07■□□□□ 0
LIG1-204ENST00000542460 ZNF433Q8N7K0 673 aaPredicted RBP15.07■□□□□ 0
LIG1-204ENST00000542460 NMD3Q96D46 503 aaKnown RBP15.07■□□□□ 0
LIG1-204ENST00000542460 RDH12Q96NR8 316 aa15.07■□□□□ 0
LIG1-204ENST00000542460 NMNAT3Q96T66 252 aa15.07■□□□□ 0
LIG1-204ENST00000542460 VCXQ9H320 206 aa15.07■□□□□ 0
LIG1-204ENST00000542460 CMC2Q9NRP2 79 aa15.07■□□□□ 0
LIG1-204ENST00000542460 GPR52Q9Y2T5 361 aa15.07■□□□□ 0
LIG1-204ENST00000542460 KLF2Q9Y5W3 355 aaPredicted RBP15.07■□□□□ 0
LIG1-204ENST00000542460 LRRK2Q5S007 2527 aa15.07■□□□□ 0
LIG1-204ENST00000542460 RIIAD1A6NNX1 92 aa15.07■□□□□ 0
LIG1-204ENST00000542460 ZAR1LA6NP61 321 aa15.07■□□□□ 0
LIG1-204ENST00000542460 C16orf97H3BN30 126 aa15.07■□□□□ 0
LIG1-204ENST00000542460 DHHO43323 396 aa15.07■□□□□ 0
LIG1-204ENST00000542460 LYZL6O75951 148 aa15.07■□□□□ 0
LIG1-204ENST00000542460 RENP00797 406 aa15.07■□□□□ 0
LIG1-204ENST00000542460 ITGA5P08648 1049 aa15.07■□□□□ 0
LIG1-204ENST00000542460 ZNF133P52736 654 aaPredicted RBP15.07■□□□□ 0
LIG1-204ENST00000542460 FOXG1P55316 489 aaPredicted RBP15.07■□□□□ 0
LIG1-204ENST00000542460 ZIK1Q3SY52 487 aaPredicted RBP15.07■□□□□ 0
LIG1-204ENST00000542460 SLX4IPQ5VYV7 408 aa15.07■□□□□ 0
LIG1-204ENST00000542460 NPEPL1Q8NDH3 523 aa15.07■□□□□ 0
LIG1-204ENST00000542460 SDR9C7Q8NEX9 313 aa15.07■□□□□ 0
LIG1-204ENST00000542460 KISS1RQ969F8 398 aaPredicted RBP15.07■□□□□ 0
LIG1-204ENST00000542460 ZNF837Q96EG3 531 aaPredicted RBP15.07■□□□□ 0
LIG1-204ENST00000542460 PRRG3Q9BZD7 231 aa15.07■□□□□ 0
LIG1-204ENST00000542460 SYT4Q9H2B2 425 aa15.07■□□□□ 0
LIG1-204ENST00000542460 TOR3AQ9H497 397 aa15.07■□□□□ 0
LIG1-204ENST00000542460 SMPD3Q9NY59 655 aaPredicted RBP15.07■□□□□ 0
LIG1-204ENST00000542460 CIB4A0PJX0 185 aa15.06■□□□□ 0
LIG1-204ENST00000542460 ZNF99A8MXY4 864 aaPredicted RBP15.06■□□□□ 0
LIG1-204ENST00000542460 SNAP29O95721 258 aa15.06■□□□□ 0
LIG1-204ENST00000542460 ZNF3P17036 446 aa15.06■□□□□ 0
LIG1-204ENST00000542460 UGT2B10P36537 528 aa15.06■□□□□ 0
LIG1-204ENST00000542460 SH3BGRP55822 239 aaPredicted RBP15.06■□□□□ 0
LIG1-204ENST00000542460 FMODQ06828 376 aa15.06■□□□□ 0
LIG1-204ENST00000542460 C10orf128Q5T292 105 aa15.06■□□□□ 0
LIG1-204ENST00000542460 C9orf135Q5VTT2 229 aa15.06■□□□□ 0
LIG1-204ENST00000542460 OR7E24Q6IFN5 339 aa15.06■□□□□ 0
LIG1-204ENST00000542460 SLC37A3Q8NCC5 494 aa15.06■□□□□ 0
LIG1-204ENST00000542460 NRG4Q8WWG1 115 aa15.06■□□□□ 0
LIG1-204ENST00000542460 SLC38A2Q96QD8 506 aa15.06■□□□□ 0
LIG1-204ENST00000542460 GRIP2Q9C0E4 1043 aa15.06■□□□□ 0
LIG1-204ENST00000542460 DOPEY1Q5JWR5 2465 aa15.06■□□□□ 0
LIG1-204ENST00000542460 OR6C68A6NDL8 312 aa15.05■□□□□ -0
LIG1-204ENST00000542460 SURF4O15260 269 aa15.05■□□□□ -0
LIG1-204ENST00000542460 SLC2A10O95528 541 aa15.05■□□□□ -0
LIG1-204ENST00000542460 IL32P24001 234 aa15.05■□□□□ -0
LIG1-204ENST00000542460 CRABP1P29762 137 aa15.05■□□□□ -0
LIG1-204ENST00000542460 ZNF84P51523 738 aa15.05■□□□□ -0
LIG1-204ENST00000542460 ARF1P84077 181 aaKnown RBP15.05■□□□□ -0
LIG1-204ENST00000542460 SORDQ00796 357 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms