RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 OR4C15Q8NGM1 316 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 HDAC2Q92769 488 aaKnown RBP11.3□□□□□ -0.6
VPS28-216ENST00000533806 PIGTQ969N2 578 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 SLC38A2Q96QD8 506 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 TSPAN32Q96QS1 320 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 GPX7Q96SL4 187 aaPredicted RBP11.3□□□□□ -0.6
VPS28-216ENST00000533806 GRIP2Q9C0E4 1043 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 SMURF2Q9HAU4 748 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 NOX3Q9HBY0 568 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 MOV10Q9HCE1 1003 aaKnown RBP11.3□□□□□ -0.6
VPS28-216ENST00000533806 NRIP3Q9NQ35 241 aa11.3□□□□□ -0.6
VPS28-216ENST00000533806 PRRC2AP48634 2157 aaKnown RBP11.29□□□□□ -0.6
VPS28-216ENST00000533806 IGKV1D-43A0A0B4J1Z2 117 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 E7EQL1 145 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 GSC2O15499 205 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 KRT36O76013 467 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 CD8AP01732 235 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 HLA-HP01893 362 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 SOD3P08294 240 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 CD14P08571 375 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 UBE2NP61088 152 aaKnown RBP11.29□□□□□ -0.6
VPS28-216ENST00000533806 ZNF770Q6IQ21 691 aaPredicted RBP11.29□□□□□ -0.6
VPS28-216ENST00000533806 C1orf94Q6P1W5 598 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 SLC25A47Q6Q0C1 308 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 B3GLCTQ6Y288 498 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 THSD4Q6ZMP0 1018 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 ZNF813Q6ZN06 617 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 HDDC2Q7Z4H3 204 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 DTX2Q86UW9 622 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 MYPOPQ86VE0 399 aaPredicted RBP11.29□□□□□ -0.6
VPS28-216ENST00000533806 IGFN1Q86VF2 1251 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 LURAP1LQ8IV03 231 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 ADGRG5Q8IZF4 528 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 SLC22A24Q8N4F4 322 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 ARIH2OSQ8N7S6 290 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 SYT14Q8NB59 555 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 SMAP2Q8WU79 429 aaPredicted RBP11.29□□□□□ -0.6
VPS28-216ENST00000533806 FBXW5Q969U6 566 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 CCDC124Q96CT7 223 aaKnown RBP11.29□□□□□ -0.6
VPS28-216ENST00000533806 KATNB1Q9BVA0 655 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 CADM1Q9BY67 442 aaKnown RBP11.29□□□□□ -0.6
VPS28-216ENST00000533806 TRIM15Q9C019 465 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 SEC61A2Q9H9S3 476 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 ZNF701Q9NV72 531 aaPredicted RBP11.29□□□□□ -0.6
VPS28-216ENST00000533806 TMEM38BQ9NVV0 291 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 CISD1Q9NZ45 108 aaKnown RBP11.29□□□□□ -0.6
VPS28-216ENST00000533806 STX18Q9P2W9 335 aaKnown RBP11.29□□□□□ -0.6
VPS28-216ENST00000533806 POFUT2Q9Y2G5 429 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 UGT2A1Q9Y4X1 527 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 LYVE1Q9Y5Y7 322 aa11.29□□□□□ -0.6
VPS28-216ENST00000533806 TEP1Q99973 2627 aaKnown RBP11.28□□□□□ -0.6
VPS28-216ENST00000533806 AQP12BA6NM10 295 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 DNAJC8O75937 253 aaPredicted RBP11.28□□□□□ -0.6
VPS28-216ENST00000533806 CECR9P0C854 216 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 B4GALT1P15291 398 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 FPR3P25089 353 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 ARR3P36575 388 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 GSSP48637 474 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 CLRN1P58418 232 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 MYBPC1Q00872 1141 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 SPIBQ01892 262 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 NAAAQ02083 359 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 FAM205BPQ63HN1 556 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 SLC22A25Q6T423 547 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 MDP1Q86V88 176 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 SKA3Q8IX90 412 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 AQP12AQ8IXF9 295 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 LRRC75A-AS1Q8N1F1 130 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 PIAS4Q8N2W9 510 aaPredicted RBP11.28□□□□□ -0.6
VPS28-216ENST00000533806 CLDN22Q8N7P3 220 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 FGFBP3Q8TAT2 258 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 RSRC1Q96IZ7 334 aaKnown RBP11.28□□□□□ -0.6
VPS28-216ENST00000533806 CCL19Q99731 98 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 ALG12Q9BV10 488 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 GSX2Q9BZM3 304 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 DENND2DQ9H6A0 471 aaPredicted RBP11.28□□□□□ -0.6
VPS28-216ENST00000533806 VNN3Q9NY84 501 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 MOKQ9UQ07 419 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 POMPQ9Y244 141 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 ADAM18Q9Y3Q7 739 aa11.28□□□□□ -0.6
VPS28-216ENST00000533806 PLCE1Q9P212 2302 aa11.27□□□□□ -0.6
VPS28-216ENST00000533806 UNC119BA6NIH7 251 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 A6NIZ1 184 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 ATP6V1G2-DDX39BF2Z307 99 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 AHCYL1O43865 530 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 NDUFB2O95178 105 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 SLC2A10O95528 541 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 TXNDC12O95881 172 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 CELA3BP08861 270 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 RAP2AP10114 183 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 ZNF14P17017 642 aaPredicted RBP11.27□□□□□ -0.61
VPS28-216ENST00000533806 CALCRP30988 508 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 ACVR1BP36896 505 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 CDH11P55287 796 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 RAP1BP61224 184 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 RAP1AP62834 184 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 ERVK-25P63136 954 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 MRPS34P82930 218 aaKnown RBP11.27□□□□□ -0.61
VPS28-216ENST00000533806 CHRNB3Q05901 458 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 FMODQ06828 376 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms