RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 IFT27Q9BW83 186 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 CHID1Q9BWS9 393 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 C1QTNF6Q9BXI9 259 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 TEX12Q9BXU0 123 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 CADM1Q9BY67 442 aaKnown RBP4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 C1orf198Q9H425 327 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 CXorf56Q9H5V9 222 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 DENND2DQ9H6A0 471 aaPredicted RBP4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 RNF121Q9H920 327 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 CCNB1IP1Q9NPC3 277 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 TBC1D23Q9NUY8 699 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 KIF17Q9P2E2 1029 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 SLC7A8Q9UHI5 535 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 ST6GALNAC2Q9UJ37 374 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 ITGB1BP2Q9UKP3 347 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 SIGLEC7Q9Y286 467 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 PLEKHA6Q9Y2H5 1048 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 SPEF1Q9Y4P9 236 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 LYVE1Q9Y5Y7 322 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 ATP23Q9Y6H3 246 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 U3KQV3 271 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 CACNA1CQ13936 2221 aa4.73□□□□□ -1.65
HMGB1P40-201ENST00000525121 HCFC1P51610 2035 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 PCNX3Q9H6A9 2034 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 MED12LQ86YW9 2145 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 FLNBO75369 2602 aaKnown RBP4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 TEX13CA0A0J9YWL9 993 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 IQCMA0A1B0GVH7 501 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 TCRBV3S1A0A5B6 114 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 PRSS37A4D1T9 235 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 ARRDC5A6NEK1 342 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 C12orf71A8MTZ7 269 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 H3BN98 237 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 SOCS2O14508 198 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 IMPA2O14732 288 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 SIAH2O43255 324 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 IDH3BO43837 385 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 SMPD2O60906 423 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 TMCC2O75069 709 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 FKBP6O75344 327 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 SLC2A10O95528 541 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 PPP1R3DO95685 299 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 IFNGP01579 166 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 HLA-HP01893 362 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 TSPAN19P0C672 248 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 APEHP13798 732 aaKnown RBP4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 CBR1P16152 277 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 CRABP1P29762 137 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 GSSP48637 474 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 PTDSS1P48651 473 aaKnown RBP4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 CENPAP49450 140 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 IDH3GP51553 393 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 HMGA2P52926 109 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 FOXG1P55316 489 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 KRTAP10-9P60411 292 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 PCBD1P61457 104 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 TUBA1BP68363 451 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 TUBA4AP68366 448 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 MRPS34P82930 218 aaKnown RBP4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 LSM11P83369 360 aaKnown RBP eCLIP4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 MYBPC1Q00872 1141 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 GALK2Q01415 458 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 HSF2Q03933 536 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 SGCAQ16586 387 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 HIST3H3Q16695 136 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 RFX4Q33E94 735 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 ZNF672Q499Z4 452 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 IQCCQ4KMZ1 466 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 PHYHD1Q5SRE7 291 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 C10orf128Q5T292 105 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 AGAP6Q5VW22 663 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 C1orf94Q6P1W5 598 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 PGBD2Q6P3X8 592 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 SEZ6L2Q6UXD5 910 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 UNQ6126/PRO20091Q6UXV3 157 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 ZNF620Q6ZNG0 422 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 C22orf34Q6ZV56 151 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 TUBA1AQ71U36 451 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 ZNF627Q7L945 461 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 SLC16A14Q7RTX9 510 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 ZER1Q7Z7L7 766 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 MDP1Q86V88 176 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 FBXL14Q8N1E6 418 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 SLC22A24Q8N4F4 322 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 ZNF611Q8N823 705 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 WDR31Q8NA23 367 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 ATG16L2Q8NAA4 619 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 IL17RDQ8NFM7 739 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 KBTBD8Q8NFY9 601 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 OR4F15Q8NGB8 312 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 OR10G2Q8NGC3 310 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 OR9Q2Q8NGE9 314 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 OR4C15Q8NGM1 316 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 ZNF519Q8TB69 540 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 TEX47Q8TBZ9 253 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 DNAJC9Q8WXX5 260 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 NSMAFQ92636 917 aa4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 AKAP1Q92667 903 aaKnown RBP eCLIP4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 HDAC2Q92769 488 aaKnown RBP4.72□□□□□ -1.65
HMGB1P40-201ENST00000525121 MCHR2Q969V1 340 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms