RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 HCCSP53701 268 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 RAC1P63000 192 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 H3F3AP84243 136 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 ROM1Q03395 351 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 AIMP2Q13155 320 aaKnown RBP7.5□□□□□ -1.21
RNF4-220ENST00000513578 POU4F3Q15319 338 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 TP53I3Q53FA7 332 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 DCAF10Q5QP82 559 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 ZNF468Q5VIY5 522 aaPredicted RBP7.5□□□□□ -1.21
RNF4-220ENST00000513578 PRAMEF20Q5VT98 475 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 ZNF227Q86WZ6 799 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 UEVLDQ8IX04 471 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 RFLNBQ8N5W9 214 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 ZNF511Q8NB15 262 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 DEFB124Q8NES8 71 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 OTOSQ8NHW6 89 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 NEIL3Q8TAT5 605 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 ACOT12Q8WYK0 555 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 RNF166Q96A37 237 aaPredicted RBP7.5□□□□□ -1.21
RNF4-220ENST00000513578 KCTD12Q96CX2 325 aaKnown RBP7.5□□□□□ -1.21
RNF4-220ENST00000513578 FER1L6-AS2Q96M78 137 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 ADAD1Q96M93 576 aaKnown RBP7.5□□□□□ -1.21
RNF4-220ENST00000513578 TSSK2Q96PF2 358 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 PIGQQ9BRB3 760 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 TMED9Q9BVK6 235 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 MRPL13Q9BYD1 178 aaKnown RBP7.5□□□□□ -1.21
RNF4-220ENST00000513578 OR2B2Q9GZK3 357 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 ZCCHC4Q9H5U6 513 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 OCEL1Q9H607 264 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 SMURF1Q9HCE7 757 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 SNTG1Q9NSN8 517 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 FAM86C1Q9NVL1 165 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 ABI3Q9P2A4 366 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 KLHL9Q9P2J3 617 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 NPIPA1Q9UND3 350 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 RASD1Q9Y272 281 aa7.5□□□□□ -1.21
RNF4-220ENST00000513578 OR2M5A3KFT3 312 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 ISPDA4D126 451 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 SHISA8B8ZZ34 492 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 LOC110117498-PIK3R3F6TDL0 507 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 H3BML4 177 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 H7C1C5 153 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 TRAF3IP2O43734 574 aaPredicted RBP7.49□□□□□ -1.21
RNF4-220ENST00000513578 SLC16A7O60669 478 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 UPK3AO75631 287 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 ARL6IP5O75915 188 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 AQP8O94778 261 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 ZNF432O94892 652 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 AKR7A3O95154 331 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 PLGP00747 810 aaPredicted RBP7.49□□□□□ -1.21
RNF4-220ENST00000513578 KRT8P05787 483 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 HLA-DOBP13765 273 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 IFNGR1P15260 489 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 CTLA4P16410 223 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 PTBP1P26599 531 aaKnown RBP eCLIP7.49□□□□□ -1.21
RNF4-220ENST00000513578 CASRP41180 1078 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 GDI2P50395 445 aaKnown RBP7.49□□□□□ -1.21
RNF4-220ENST00000513578 CCR9P51686 369 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 AGFG1P52594 562 aaKnown RBP7.49□□□□□ -1.21
RNF4-220ENST00000513578 ZNF133P52736 654 aaPredicted RBP7.49□□□□□ -1.21
RNF4-220ENST00000513578 OR2B6P58173 313 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 B3GALT5-AS1P59052 145 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 GPR85P60893 370 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 RPS11P62280 158 aaKnown RBP eCLIP7.49□□□□□ -1.21
RNF4-220ENST00000513578 LCN6P62502 163 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 CSNK2A1P68400 391 aaPredicted RBP7.49□□□□□ -1.21
RNF4-220ENST00000513578 POU3F1Q03052 451 aaPredicted RBP7.49□□□□□ -1.21
RNF4-220ENST00000513578 GLO1Q04760 184 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 ATP1A4Q13733 1029 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 HIST3H3Q16695 136 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 ZNF181Q2M3W8 571 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 ACSM3Q53FZ2 586 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 YIF1BQ5BJH7 314 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 THEM4Q5T1C6 240 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 B3GNTL1Q67FW5 361 aaPredicted RBP7.49□□□□□ -1.21
RNF4-220ENST00000513578 C16orf87Q6PH81 154 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 DEGS2Q6QHC5 323 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 ARL9Q6T311 187 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 METAP1DQ6UB28 335 aaPredicted RBP7.49□□□□□ -1.21
RNF4-220ENST00000513578 Q6ZNX1 250 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 ASCL5Q7RTU5 278 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 FAM220AQ7Z4H9 259 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 MDGA2Q7Z553 956 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 BEST3Q8N1M1 668 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 MINDY2Q8NBR6 621 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 OR6X1Q8NH79 312 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 SMAP2Q8WU79 429 aaPredicted RBP7.49□□□□□ -1.21
RNF4-220ENST00000513578 CHPT1Q8WUD6 406 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 THRSPQ92748 146 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 GHSRQ92847 366 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 THOC3Q96J01 351 aaKnown RBP7.49□□□□□ -1.21
RNF4-220ENST00000513578 C5orf34Q96MH7 638 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 RBP7Q96R05 134 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 OR5B2Q96R09 309 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 OR8B4Q96RC9 309 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 DCLRE1CQ96SD1 692 aaKnown RBP7.49□□□□□ -1.21
RNF4-220ENST00000513578 NAA11Q9BSU3 229 aaPredicted RBP7.49□□□□□ -1.21
RNF4-220ENST00000513578 HDHD5Q9BXW7 423 aa7.49□□□□□ -1.21
RNF4-220ENST00000513578 C6orf62Q9GZU0 229 aaPredicted RBP7.49□□□□□ -1.21
RNF4-220ENST00000513578 MRPL22Q9NWU5 206 aaKnown RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms