RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 LINGO2Q7L985 606 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 ADCK1Q86TW2 530 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 GABRG1Q8N1C3 465 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 LNX2Q8N448 690 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 CLEC18CQ8NCF0 446 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 OR52E2Q8NGJ4 325 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 NSMAFQ92636 917 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 TMEM54Q969K7 222 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 OTULINQ96BN8 352 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 PLEKHA8Q96JA3 519 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 RBP7Q96R05 134 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 KCNK17Q96T54 332 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 SLC29A1Q99808 456 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 ALG12Q9BV10 488 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 TAS2R16Q9NYV7 291 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 FOXD3Q9UJU5 478 aaPredicted RBP13.19□□□□□ -0.3
NUP54-213ENST00000513352 PRSS37A4D1T9 235 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 CENPBD1B2RD01 187 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 C16orf97H3BN30 126 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 IMPA2O14732 288 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 MGRN1O60291 552 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 RAD51DO75771 328 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 SEC14L2O76054 403 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 SLC2A10O95528 541 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 TXNDC12O95881 172 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 IFNGP01579 166 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 ITGA5P08648 1049 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 CDKN2AP42771 156 aaKnown RBP13.18□□□□□ -0.3
NUP54-213ENST00000513352 ZNF84P51523 738 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 SNTB1Q13884 538 aaKnown RBP13.18□□□□□ -0.3
NUP54-213ENST00000513352 P2RY6Q15077 328 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 STK11Q15831 433 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 FBXL19-AS1Q494R0 122 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 STAC2Q6ZMT1 411 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 PTCHD4Q6ZW05 846 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 BHLHA15Q7RTS1 189 aaPredicted RBP13.18□□□□□ -0.3
NUP54-213ENST00000513352 NMNAT3Q96T66 252 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 MRPL13Q9BYD1 178 aaKnown RBP13.18□□□□□ -0.3
NUP54-213ENST00000513352 VCXQ9H320 206 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 FN3KQ9H479 309 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 KLHL21Q9UJP4 597 aa13.18□□□□□ -0.3
NUP54-213ENST00000513352 FASNP49327 2511 aaKnown RBP13.18□□□□□ -0.3
NUP54-213ENST00000513352 DOPEY1Q5JWR5 2465 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 SLC22A23A1A5C7 686 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 DHHO43323 396 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 HMGN1P05114 100 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 ZNF3P17036 446 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 HOXC12P31275 282 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 UGT2B10P36537 528 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 GIPRP48546 466 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 CENPAP49450 140 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 CDK5Q00535 292 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 TGFBR3Q03167 851 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 TFF3Q07654 80 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 NPRL3Q12980 569 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 PTGES3Q15185 160 aaKnown RBP13.17□□□□□ -0.3
NUP54-213ENST00000513352 SFRP5Q5T4F7 317 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 ALKBH2Q6NS38 261 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 ACSM5Q6NUN0 579 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 ZNF433Q8N7K0 673 aaPredicted RBP13.17□□□□□ -0.3
NUP54-213ENST00000513352 CYB561A3Q8NBI2 242 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 FNDC8Q8TC99 324 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 MCHR2Q969V1 340 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 ZNF837Q96EG3 531 aaPredicted RBP13.17□□□□□ -0.3
NUP54-213ENST00000513352 SLC38A2Q96QD8 506 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 GABARAPL3Q9BY60 117 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 PRRG3Q9BZD7 231 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 SYT4Q9H2B2 425 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 TOR3AQ9H497 397 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 SLC25A19Q9HC21 320 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 RPRD1BQ9NQG5 326 aaKnown RBP13.17□□□□□ -0.3
NUP54-213ENST00000513352 TVP23BQ9NYZ1 205 aa13.17□□□□□ -0.3
NUP54-213ENST00000513352 DOPEY2Q9Y3R5 2298 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 A0A1W2PPL8 197 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 CASQ2O14958 399 aaPredicted RBP13.16□□□□□ -0.3
NUP54-213ENST00000513352 SLC16A7O60669 478 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 SNAP29O95721 258 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 PSMB1P20618 241 aaKnown RBP13.16□□□□□ -0.3
NUP54-213ENST00000513352 COX5AP20674 150 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 PAICSP22234 425 aaKnown RBP13.16□□□□□ -0.3
NUP54-213ENST00000513352 EPHA2P29317 976 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 POLR2IP36954 125 aaKnown RBP13.16□□□□□ -0.3
NUP54-213ENST00000513352 SH3BGRP55822 239 aaPredicted RBP13.16□□□□□ -0.3
NUP54-213ENST00000513352 ARF1P84077 181 aaKnown RBP13.16□□□□□ -0.3
NUP54-213ENST00000513352 RIPK1Q13546 671 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 THEM4Q5T1C6 240 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 OGFRL1Q5TC84 451 aaPredicted RBP13.16□□□□□ -0.3
NUP54-213ENST00000513352 LRFN4Q6PJG9 635 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 KLHL24Q6TFL4 600 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 ZNF813Q6ZN06 617 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 SLC37A3Q8NCC5 494 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 STEAP2Q8NFT2 490 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 FOXB1Q99853 325 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 HDHD5Q9BXW7 423 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 ACTR6Q9GZN1 396 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 NPDC1Q9NQX5 325 aaPredicted RBP13.16□□□□□ -0.3
NUP54-213ENST00000513352 C8orf4Q9NR00 106 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 CMC2Q9NRP2 79 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 GPR52Q9Y2T5 361 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 KLF2Q9Y5W3 355 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms