RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 UBE3DQ7Z6J8 389 aa10.4□□□□□ -0.75
LIMCH1-208ENST00000508501 SYT9Q86SS6 491 aa10.4□□□□□ -0.75
LIMCH1-208ENST00000508501 OR11L1Q8NGX0 322 aa10.4□□□□□ -0.75
LIMCH1-208ENST00000508501 EXTL1Q92935 676 aa10.4□□□□□ -0.75
LIMCH1-208ENST00000508501 UCN3Q969E3 161 aa10.4□□□□□ -0.75
LIMCH1-208ENST00000508501 SHDQ96IW2 340 aa10.4□□□□□ -0.75
LIMCH1-208ENST00000508501 AKIP1Q9NQ31 210 aa10.4□□□□□ -0.75
LIMCH1-208ENST00000508501 LOC102723971A0A1B0GUV8 181 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 PLSCR5A0PG75 271 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 B4DEV8 164 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 RAB27BO00194 218 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 SULT2B1O00204 365 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 LIMS3P0CW19 117 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 LIMS4P0CW20 117 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 PTHLHP12272 177 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 CSF2RBP32927 897 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 OR7E24Q6IFN5 339 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 PRR18Q8N4B5 295 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 TMEM217Q8N7C4 229 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 LHFPL5Q8TAF8 219 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 KLK6Q92876 244 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 RELTQ969Z4 430 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 GABARAPL1Q9H0R8 117 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 TMEM38AQ9H6F2 299 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 FKRPQ9H9S5 495 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 RPH3ALQ9UNE2 315 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 PCDHGA1Q9Y5H4 931 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 ACOD1A6NK06 481 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 TTRP02766 147 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 ALDOCP09972 364 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 CPEP16870 476 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 GDI1P31150 447 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 SPINT3P49223 89 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 FAM189BP81408 668 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 RPS26P11Q5JNZ5 115 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 PIP5KL1Q5T9C9 394 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 FAM26EQ8N5C1 309 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 BRI3BPQ8WY22 251 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 SHARPINQ9H0F6 387 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 GNG12Q9UBI6 72 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 PLAGL1Q9UM63 463 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 TMEM218A2RU14 115 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 ZNF860A6NHJ4 632 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 SPINT2O43291 252 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 SOX15O60248 233 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 LGI1O95970 557 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 SNRPEP62304 92 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 KIR2DS3Q14952 304 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 HAGHQ16775 308 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 ENKD1Q9H0I2 346 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 MTCH1Q9NZJ7 389 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 A0A0A6YYJ9 748 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 NCBP2LA6PVI3 153 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 M0R2Z0 102 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 CST4P01036 141 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 FCGR2AP12318 317 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 SLC6A11P48066 632 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 ELAVL3Q14576 367 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 COL5A1-AS1Q5SY13 56 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 ZNF547Q8IVP9 402 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 SYS1Q8N2H4 156 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 SAT2Q96F10 170 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 VN1R3Q9BXE9 311 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 SEC11CQ9BY50 192 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 NXF5Q9H1B4 397 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 GKN1Q9NS71 199 aa10.39□□□□□ -0.75
LIMCH1-208ENST00000508501 LMTK2Q8IWU2 1503 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 A0A0U1RQF3 1178 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 GPR171O14626 319 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 YIF1AO95070 293 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 TBX18O95935 607 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 PCSK6P29122 969 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 NPY5RQ15761 445 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 PLXDC1Q8IUK5 500 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 TMEM151BQ8IW70 566 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 GABRG1Q8N1C3 465 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 LMO3Q8TAP4 145 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 CMBLQ96DG6 245 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 OR10C1Q96KK4 312 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 ZNF583Q96ND8 569 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 OR2M5A3KFT3 312 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 GABRR3A8MPY1 467 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 NCR1O76036 304 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 GLAP06280 429 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 IGFBP1P08833 259 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 OR8G3PP0DMU2 310 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 RPL17P18621 184 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 FKBP2P26885 142 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 CNN1P51911 297 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 KCNJ10P78508 379 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 MFAP5Q13361 173 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 HLXQ14774 488 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 SLC5A12Q1EHB4 618 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 LILRA2Q8N149 483 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 WDR61Q9GZS3 305 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 DLL4Q9NR61 685 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 ASIC5Q9NY37 505 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 PADI1Q9ULC6 663 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 SNX11Q9Y5W9 270 aa10.38□□□□□ -0.75
LIMCH1-208ENST00000508501 NPIPB15A6NHN6 443 aaPredicted RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms