RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 FCRLAQ7L513 359 aa7.54□□□□□ -1.2
USP54-215ENST00000497106 VASH2Q86V25 355 aa7.54□□□□□ -1.2
USP54-215ENST00000497106 SYT14Q8NB59 555 aa7.54□□□□□ -1.2
USP54-215ENST00000497106 MOGAT1Q96PD6 335 aa7.54□□□□□ -1.2
USP54-215ENST00000497106 B9D1Q9UPM9 204 aa7.54□□□□□ -1.2
USP54-215ENST00000497106 RCE1Q9Y256 329 aa7.54□□□□□ -1.2
USP54-215ENST00000497106 CENPXA8MT69 81 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 FAM166BA8MTA8 275 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 TAF4O00268 1085 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 WDPCPO95876 746 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 UQCRC1P31930 480 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 TP53I3Q53FA7 332 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 YIF1BQ5BJH7 314 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 FAM180AQ6UWF9 173 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 GALNTL5Q7Z4T8 443 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 OR51L1Q8NGJ5 315 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 GIMAP1Q8WWP7 306 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 ASB10Q8WXI3 467 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 YIPF6Q96EC8 236 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 LRRC46Q96FV0 321 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 GPA33Q99795 319 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 OCEL1Q9H607 264 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 ZNF281Q9Y2X9 895 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 IGKV1D-42A0A075B6H8 117 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 TRGV5A0A0B4J1U4 118 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 A0A1W2PNR3 127 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 IGHA1P01876 353 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 CD96P40200 585 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 GP2P55259 537 aaKnown RBP7.53□□□□□ -1.2
USP54-215ENST00000497106 CLDN6P56747 220 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 ZNF45Q02386 682 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 LSAMPQ13449 338 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 IRF3Q14653 427 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 GLT8D1Q68CQ7 371 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 VASH1Q7L8A9 365 aaPredicted RBP7.53□□□□□ -1.2
USP54-215ENST00000497106 CEACAM19Q7Z692 300 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 ZNF227Q86WZ6 799 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 TM9SF2Q99805 663 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 RBM24Q9BX46 236 aaKnown RBP7.53□□□□□ -1.2
USP54-215ENST00000497106 VSX1Q9NZR4 365 aaPredicted RBP7.53□□□□□ -1.2
USP54-215ENST00000497106 PI4KAP42356 2102 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 NME2P1O60361 137 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 THY1P04216 161 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 MSR1P21757 451 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 NME2P22392 152 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 BICRALQ6AI39 1079 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 OR2A2Q6IF42 318 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 H3F3CQ6NXT2 135 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 TMEM99Q8N816 258 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 DNAJA3Q96EY1 480 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 GNRHR2Q96P88 292 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 AKIRIN1Q9H9L7 192 aaPredicted RBP7.53□□□□□ -1.2
USP54-215ENST00000497106 FBXL2Q9UKC9 423 aa7.53□□□□□ -1.2
USP54-215ENST00000497106 TVP23AA6NH52 213 aa7.52□□□□□ -1.2
USP54-215ENST00000497106 ZNF587BE7ETH6 402 aa7.52□□□□□ -1.2
USP54-215ENST00000497106 LRRN3E7EW58 273 aa7.52□□□□□ -1.2
USP54-215ENST00000497106 CELA2AP08217 269 aa7.52□□□□□ -1.2
USP54-215ENST00000497106 NR4A1P22736 598 aa7.52□□□□□ -1.2
USP54-215ENST00000497106 ETV1P50549 477 aa7.52□□□□□ -1.2
USP54-215ENST00000497106 CAMK2DQ13557 499 aa7.52□□□□□ -1.2
USP54-215ENST00000497106 RTP5Q14D33 572 aa7.52□□□□□ -1.2
USP54-215ENST00000497106 BCL2A1Q16548 175 aa7.52□□□□□ -1.2
USP54-215ENST00000497106 GXYLT1Q4G148 440 aa7.52□□□□□ -1.2
USP54-215ENST00000497106 DEGS2Q6QHC5 323 aa7.52□□□□□ -1.2
USP54-215ENST00000497106 MINDY2Q8NBR6 621 aa7.52□□□□□ -1.2
USP54-215ENST00000497106 FAM83FQ8NEG4 500 aaPredicted RBP7.52□□□□□ -1.2
USP54-215ENST00000497106 OR5M1Q8NGP8 315 aa7.52□□□□□ -1.2
USP54-215ENST00000497106 TMEM203Q969S6 136 aa7.52□□□□□ -1.2
USP54-215ENST00000497106 KCTD12Q96CX2 325 aaKnown RBP7.52□□□□□ -1.2
USP54-215ENST00000497106 TNFSF11O14788 317 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 LRRTM2O43300 516 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 CXCL13O43927 109 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 HRGP04196 525 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 PCMT1P22061 227 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 TGM4P49221 684 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 MTNR1BP49286 362 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 DLX5P56178 289 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 TPTEP56180 551 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 CLDN15P56746 228 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 RSPO4Q2I0M5 234 aaPredicted RBP7.52□□□□□ -1.21
USP54-215ENST00000497106 TRIM16LQ309B1 348 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 PNLDC1Q8NA58 520 aaKnown RBP7.52□□□□□ -1.21
USP54-215ENST00000497106 GJC3Q8NFK1 279 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 HAS2Q92819 552 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 RELTQ969Z4 430 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 CENPOQ9BU64 300 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 PCDHB16Q9NRJ7 776 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 FBXL3Q9UKT7 428 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 CMAHPQ9Y471 501 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 TRABD2BA6NFA1 517 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 UBCP0CG48 685 aaKnown RBP7.52□□□□□ -1.21
USP54-215ENST00000497106 SLC6A9P48067 706 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 FOXL2P58012 376 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 WIPI1Q5MNZ9 446 aaPredicted RBP7.52□□□□□ -1.21
USP54-215ENST00000497106 LYPD8Q6UX82 237 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 BCDIN3DQ7Z5W3 292 aaKnown RBP7.52□□□□□ -1.21
USP54-215ENST00000497106 OR8H2Q8N162 312 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 ARMC10Q8N2F6 343 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 BBS1Q8NFJ9 593 aa7.52□□□□□ -1.21
USP54-215ENST00000497106 APH1AQ96BI3 265 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms