RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 OMPP47874 163 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 ERFP50548 548 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 RPS4XP62701 263 aaKnown RBP14.31□□□□□ -0.12
SF3A1-209ENST00000496189 LAPTM4AQ15012 233 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 MEX3DQ86XN8 651 aaKnown RBP14.31□□□□□ -0.12
SF3A1-209ENST00000496189 PAPD5Q8NDF8 572 aaKnown RBP14.31□□□□□ -0.12
SF3A1-209ENST00000496189 NOXO1Q8NFA2 376 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 OR13C2Q8NGS9 318 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 MOSPD2Q8NHP6 518 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 FNDC8Q8TC99 324 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 GNPDA2Q8TDQ7 276 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 SMAP2Q8WU79 429 aaPredicted RBP14.31□□□□□ -0.12
SF3A1-209ENST00000496189 TMEM54Q969K7 222 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 GTPBP3Q969Y2 492 aaKnown RBP14.31□□□□□ -0.12
SF3A1-209ENST00000496189 TNFRSF13CQ96RJ3 184 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 TXNIPQ9H3M7 391 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 FBXL3Q9UKT7 428 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 LAMP3Q9UQV4 416 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 ATP23Q9Y6H3 246 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 CCDC168Q8NDH2 2452 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 TRAV27A0A087WT01 109 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 A6NIZ1 184 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 DHHO43323 396 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 DEAF1O75398 565 aaPredicted RBP14.3□□□□□ -0.12
SF3A1-209ENST00000496189 E2F6O75461 281 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 SEC14L2O76054 403 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 QDPRP09417 244 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 PGA4P0DJD7 388 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 PGA3P0DJD8 388 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 CD79AP11912 226 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 BMP4P12644 408 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 B4GALT1P15291 398 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 ACADSP16219 412 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 FPR3P25089 353 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 GUCA1AP43080 201 aaPredicted RBP14.3□□□□□ -0.12
SF3A1-209ENST00000496189 LIMS1P48059 325 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 ARHGDIAP52565 204 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 CTXN1P60606 82 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 RAP1BP61224 184 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 RAP1AP62834 184 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 TOP3AQ13472 1001 aaPredicted RBP14.3□□□□□ -0.12
SF3A1-209ENST00000496189 C3orf36Q3SXR2 165 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 NHLRC1Q6VVB1 395 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 ZER1Q7Z7L7 766 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 LRRC75A-AS1Q8N1F1 130 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 FAM169BQ8N8A8 192 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 ASB10Q8WXI3 467 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 TRMT61AQ96FX7 289 aaKnown RBP14.3□□□□□ -0.12
SF3A1-209ENST00000496189 RBP7Q96R05 134 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 CXXC4Q9H2H0 198 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 KCNN2Q9H2S1 579 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 DENND2DQ9H6A0 471 aaPredicted RBP14.3□□□□□ -0.12
SF3A1-209ENST00000496189 DNAJB9Q9UBS3 223 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 U3KQV3 271 aa14.3□□□□□ -0.12
SF3A1-209ENST00000496189 VSTM5A8MXK1 200 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 SHISA9B4DS77 424 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 XKRYO14609 159 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 CDC42EP2O14613 210 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 UBL3O95164 117 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 NDUFB2O95178 105 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 RAB36O95755 333 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 FCGR1AP12314 374 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 CBR1P16152 277 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 ACVR1BP36896 505 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 RPL27P61353 136 aaKnown RBP14.29□□□□□ -0.12
SF3A1-209ENST00000496189 TUBA1BP68363 451 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 TUBA4AP68366 448 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 NKX6-1P78426 367 aaPredicted RBP14.29□□□□□ -0.12
SF3A1-209ENST00000496189 CD47Q08722 323 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 NPRL3Q12980 569 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 TESK1Q15569 626 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 MICAQ29983 383 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 GSG1Q2KHT4 349 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 PHYHD1Q5SRE7 291 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 AGAP6Q5VW22 663 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 SHEQ5VZ18 495 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 C1orf94Q6P1W5 598 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 TUBA1AQ71U36 451 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 FBXL14Q8N1E6 418 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 IL17RDQ8NFM7 739 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 OR4C15Q8NGM1 316 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 UTP4Q969X6 686 aaKnown RBP14.29□□□□□ -0.12
SF3A1-209ENST00000496189 ZNF837Q96EG3 531 aaPredicted RBP14.29□□□□□ -0.12
SF3A1-209ENST00000496189 KATNB1Q9BVA0 655 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 GRHPRQ9UBQ7 328 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 AP4S1Q9Y587 144 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 AKAP6Q13023 2319 aa14.29□□□□□ -0.12
SF3A1-209ENST00000496189 MGRN1O60291 552 aa14.28□□□□□ -0.12
SF3A1-209ENST00000496189 TRMUO75648 421 aaKnown RBP14.28□□□□□ -0.12
SF3A1-209ENST00000496189 OR8G3PP0DMU2 310 aa14.28□□□□□ -0.12
SF3A1-209ENST00000496189 FABP6P51161 128 aa14.28□□□□□ -0.12
SF3A1-209ENST00000496189 TSPAN31Q12999 210 aa14.28□□□□□ -0.12
SF3A1-209ENST00000496189 CCNIQ14094 377 aa14.28□□□□□ -0.12
SF3A1-209ENST00000496189 RPL13AP3Q6NVV1 102 aa14.28□□□□□ -0.12
SF3A1-209ENST00000496189 ZNF544Q6NX49 715 aa14.28□□□□□ -0.12
SF3A1-209ENST00000496189 PGBD2Q6P3X8 592 aa14.28□□□□□ -0.12
SF3A1-209ENST00000496189 SMARCD3Q6STE5 483 aa14.28□□□□□ -0.12
SF3A1-209ENST00000496189 ZNF627Q7L945 461 aa14.28□□□□□ -0.12
SF3A1-209ENST00000496189 DPPA2Q7Z7J5 298 aa14.28□□□□□ -0.12
SF3A1-209ENST00000496189 SYT14Q8NB59 555 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms