RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 RABEP2Q9H5N1 569 aa18.92■□□□□ 0.62
HDDC3-203ENST00000494993 SLC7A7Q9UM01 511 aa18.92■□□□□ 0.62
HDDC3-203ENST00000494993 DYSFO75923 2080 aa18.92■□□□□ 0.62
HDDC3-203ENST00000494993 SLC22A23A1A5C7 686 aa18.91■□□□□ 0.62
HDDC3-203ENST00000494993 FARS2O95363 451 aaKnown RBP18.91■□□□□ 0.62
HDDC3-203ENST00000494993 MTPNP58546 118 aa18.91■□□□□ 0.62
HDDC3-203ENST00000494993 SELPLGQ14242 412 aa18.91■□□□□ 0.62
HDDC3-203ENST00000494993 TSPYL5Q86VY4 417 aaPredicted RBP18.91■□□□□ 0.62
HDDC3-203ENST00000494993 MEX3DQ86XN8 651 aaKnown RBP18.91■□□□□ 0.62
HDDC3-203ENST00000494993 LRRC17Q8N6Y2 441 aa18.91■□□□□ 0.62
HDDC3-203ENST00000494993 SLC30A7Q8NEW0 376 aa18.91■□□□□ 0.62
HDDC3-203ENST00000494993 VANGL1Q8TAA9 524 aaPredicted RBP18.91■□□□□ 0.62
HDDC3-203ENST00000494993 TMEM186Q96B77 213 aa18.91■□□□□ 0.62
HDDC3-203ENST00000494993 CGREF1Q99674 301 aa18.91■□□□□ 0.62
HDDC3-203ENST00000494993 ZNF416Q9BWM5 594 aa18.91■□□□□ 0.62
HDDC3-203ENST00000494993 HIF1ANQ9NWT6 349 aa18.91■□□□□ 0.62
HDDC3-203ENST00000494993 ZNF229Q9UJW7 825 aa18.91■□□□□ 0.62
HDDC3-203ENST00000494993 TRAPPC13A5PLN9 417 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 KPNA4O00629 521 aaPredicted RBP18.9■□□□□ 0.62
HDDC3-203ENST00000494993 WNT9BO14905 357 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 PPIHO43447 177 aaKnown RBP18.9■□□□□ 0.62
HDDC3-203ENST00000494993 RP2O75695 350 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 MSMBP08118 114 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 FAM157BP0CG42 384 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 PGA4P0DJD7 388 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 PGA3P0DJD8 388 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 NKPD1Q17RQ9 610 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 ALKBH6Q3KRA9 238 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 TMEM53Q6P2H8 277 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 SLC30A8Q8IWU4 369 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 PAQR4Q8N4S7 273 aaPredicted RBP18.9■□□□□ 0.62
HDDC3-203ENST00000494993 DPP10Q8N608 796 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 MPP4Q96JB8 637 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 ZNF426Q9BUY5 554 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 SLC19A3Q9BZV2 496 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 C1orf198Q9H425 327 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 METTL17Q9H7H0 456 aaPredicted RBP18.9■□□□□ 0.62
HDDC3-203ENST00000494993 RNF121Q9H920 327 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 CDH20Q9HBT6 801 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 LPAR2Q9HBW0 351 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 TREM2Q9NZC2 230 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 TAAR3PQ9P1P4 343 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 NDUFAF1Q9Y375 327 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 GRIP1Q9Y3R0 1128 aa18.9■□□□□ 0.62
HDDC3-203ENST00000494993 CLPTM1O96005 669 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 HIST1H2ABP04908 130 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 QDPRP09417 244 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 ASAH2BP0C7U1 165 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 GAAP10253 952 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 UMPSP11172 480 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 CD247P20963 164 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 MAGEB1P43366 347 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 SELENOVP59797 346 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 HIST3H2AQ7L7L0 130 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 DPPA2Q7Z7J5 298 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 PATL1Q86TB9 770 aaKnown RBP18.89■□□□□ 0.61
HDDC3-203ENST00000494993 RETREG3Q86VR2 466 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP18.89■□□□□ 0.61
HDDC3-203ENST00000494993 OR4K5Q8NGD3 323 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 HIST1H2ACQ93077 130 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 PCDHAC1Q9H158 963 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 OCEL1Q9H607 264 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 GPR160Q9UJ42 338 aa18.89■□□□□ 0.61
HDDC3-203ENST00000494993 IGLV3-9A0A075B6K5 115 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 A0A0A6YYJ9 748 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 C17orf100A8MU93 164 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 BCL10O95999 233 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 IGHG1P01857 330 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 CCL2P13500 99 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 ZNF250P15622 560 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 PCGF2P35227 344 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 KLF3P57682 345 aaPredicted RBP18.88■□□□□ 0.61
HDDC3-203ENST00000494993 LMO4P61968 165 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 SLC36A2Q495M3 483 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 SLC16A14Q7RTX9 510 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 NANOGNBQ7Z5D8 188 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 OR51F2Q8NH61 342 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 SYNPRQ8TBG9 265 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 DYDC1Q8WWB3 177 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 STON2Q8WXE9 905 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 TAMM41Q96BW9 452 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 LRRC37BQ96QE4 947 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 TSPAN32Q96QS1 320 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 OR51B6Q9H340 312 aa18.88■□□□□ 0.61
HDDC3-203ENST00000494993 KAT8Q9H7Z6 458 aaKnown RBP18.88■□□□□ 0.61
HDDC3-203ENST00000494993 HINT3Q9NQE9 182 aaKnown RBP18.88■□□□□ 0.61
HDDC3-203ENST00000494993 ANGPT2O15123 496 aa18.87■□□□□ 0.61
HDDC3-203ENST00000494993 VENTXO95231 258 aa18.87■□□□□ 0.61
HDDC3-203ENST00000494993 SNAP29O95721 258 aa18.87■□□□□ 0.61
HDDC3-203ENST00000494993 CLRN1P58418 232 aa18.87■□□□□ 0.61
HDDC3-203ENST00000494993 ERVS71-1P61550 626 aa18.87■□□□□ 0.61
HDDC3-203ENST00000494993 HIST3H3Q16695 136 aa18.87■□□□□ 0.61
HDDC3-203ENST00000494993 TBC1D28Q2M2D7 210 aa18.87■□□□□ 0.61
HDDC3-203ENST00000494993 NRN1LQ496H8 165 aa18.87■□□□□ 0.61
HDDC3-203ENST00000494993 SEMA6DQ8NFY4 1073 aa18.87■□□□□ 0.61
HDDC3-203ENST00000494993 SLC26A7Q8TE54 656 aa18.87■□□□□ 0.61
HDDC3-203ENST00000494993 SNX33Q8WV41 574 aa18.87■□□□□ 0.61
HDDC3-203ENST00000494993 MCHR2Q969V1 340 aa18.87■□□□□ 0.61
HDDC3-203ENST00000494993 ZNF347Q96SE7 839 aa18.87■□□□□ 0.61
HDDC3-203ENST00000494993 PRSS27Q9BQR3 290 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms