RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 NPRL3Q12980 569 aa13.56□□□□□ -0.24
HMGA1-206ENST00000478214 TRIM25Q14258 630 aaKnown RBP13.56□□□□□ -0.24
HMGA1-206ENST00000478214 C3orf36Q3SXR2 165 aa13.56□□□□□ -0.24
HMGA1-206ENST00000478214 ANKDD1AQ495B1 522 aa13.56□□□□□ -0.24
HMGA1-206ENST00000478214 ZBED5Q49AG3 693 aa13.56□□□□□ -0.24
HMGA1-206ENST00000478214 HDDC2Q7Z4H3 204 aa13.56□□□□□ -0.24
HMGA1-206ENST00000478214 ZDHHC21Q8IVQ6 265 aa13.56□□□□□ -0.24
HMGA1-206ENST00000478214 HTRA1Q92743 480 aa13.56□□□□□ -0.24
HMGA1-206ENST00000478214 HDAC2Q92769 488 aaKnown RBP13.56□□□□□ -0.24
HMGA1-206ENST00000478214 MCHR2Q969V1 340 aa13.56□□□□□ -0.24
HMGA1-206ENST00000478214 DHRS9Q9BPW9 319 aa13.56□□□□□ -0.24
HMGA1-206ENST00000478214 GSX2Q9BZM3 304 aa13.56□□□□□ -0.24
HMGA1-206ENST00000478214 C1orf21Q9H246 121 aa13.56□□□□□ -0.24
HMGA1-206ENST00000478214 MOV10Q9HCE1 1003 aaKnown RBP13.56□□□□□ -0.24
HMGA1-206ENST00000478214 IL1RAPQ9NPH3 570 aa13.56□□□□□ -0.24
HMGA1-206ENST00000478214 ZNF701Q9NV72 531 aaPredicted RBP13.56□□□□□ -0.24
HMGA1-206ENST00000478214 ZNF224Q9NZL3 707 aa13.56□□□□□ -0.24
HMGA1-206ENST00000478214 ZNF346Q9UL40 294 aaKnown RBP13.56□□□□□ -0.24
HMGA1-206ENST00000478214 PRPF19Q9UMS4 504 aaKnown RBP13.56□□□□□ -0.24
HMGA1-206ENST00000478214 TCRBV5S2A0A599 114 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 SH3PXD2BA1X283 911 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 CENPBD1B2RD01 187 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 OVOL3O00110 214 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 ARHGEF9O43307 516 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 TMCC2O75069 709 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 GADD45GO95257 159 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 IGHMP01871 453 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 CRYAAP02489 173 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 ZNF26P17031 533 aaPredicted RBP13.55□□□□□ -0.24
HMGA1-206ENST00000478214 TTKP33981 857 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 ARR3P36575 388 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 OMPP47874 163 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 SMIM11AP58511 58 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 RPL27P61353 136 aaKnown RBP13.55□□□□□ -0.24
HMGA1-206ENST00000478214 NAAAQ02083 359 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 PIGFQ07326 219 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 Q5PR19 223 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 SHEQ5VZ18 495 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 LCN8Q6JVE9 175 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 PIWIL3Q7Z3Z3 882 aaKnown RBP13.55□□□□□ -0.24
HMGA1-206ENST00000478214 DTX2Q86UW9 622 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 DHFR2Q86XF0 187 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 SKA3Q8IX90 412 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 SLC22A24Q8N4F4 322 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 GTPBP3Q969Y2 492 aaKnown RBP13.55□□□□□ -0.24
HMGA1-206ENST00000478214 CCDC124Q96CT7 223 aaKnown RBP13.55□□□□□ -0.24
HMGA1-206ENST00000478214 NMD3Q96D46 503 aaKnown RBP13.55□□□□□ -0.24
HMGA1-206ENST00000478214 TSPAN32Q96QS1 320 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 KCNK17Q96T54 332 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 GPA33Q99795 319 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 KCNS3Q9BQ31 491 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 THTPAQ9BU02 230 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 TRAF4Q9BUZ4 470 aaPredicted RBP13.55□□□□□ -0.24
HMGA1-206ENST00000478214 KATNB1Q9BVA0 655 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 TMUB1Q9BVT8 246 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 MUC13Q9H3R2 512 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 FAIMQ9NVQ4 179 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 TMEM38BQ9NVV0 291 aa13.55□□□□□ -0.24
HMGA1-206ENST00000478214 STX18Q9P2W9 335 aaKnown RBP13.55□□□□□ -0.24
HMGA1-206ENST00000478214 ACANP16112 2415 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 IGKV1D-43A0A0B4J1Z2 117 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 PTP4A3O75365 173 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 SLC2A10O95528 541 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 PATE4P0C8F1 98 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 PAX1P15863 534 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 CALCRP30988 508 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 RRM2P31350 389 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 RPL4P36578 427 aaKnown RBP13.54□□□□□ -0.24
HMGA1-206ENST00000478214 ACVR1BP36896 505 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 CDKN1AP38936 164 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 FABP6P51161 128 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 ZNF133P52736 654 aaPredicted RBP13.54□□□□□ -0.24
HMGA1-206ENST00000478214 ERVK-25P63136 954 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 FMODQ06828 376 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 CD47Q08722 323 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 TAF11Q15544 211 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 GSG1Q2KHT4 349 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 MTX3Q5HYI7 312 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 AGAP6Q5VW22 663 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 ZER1Q7Z7L7 766 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 CLDN22Q8N7P3 220 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 FGFBP3Q8TAT2 258 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 ZNF519Q8TB69 540 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 NANOS1Q8WY41 292 aaKnown RBP13.54□□□□□ -0.24
HMGA1-206ENST00000478214 RSRC1Q96IZ7 334 aaKnown RBP13.54□□□□□ -0.24
HMGA1-206ENST00000478214 SH3GL3Q99963 347 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 AURKCQ9UQB9 309 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 SIGLEC7Q9Y286 467 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 ADAM18Q9Y3Q7 739 aa13.54□□□□□ -0.24
HMGA1-206ENST00000478214 MTORP42345 2549 aa13.53□□□□□ -0.24
HMGA1-206ENST00000478214 FLNAP21333 2647 aaKnown RBP13.53□□□□□ -0.24
HMGA1-206ENST00000478214 IGHV2OR16-5A0A0B4J2B6 119 aa13.53□□□□□ -0.24
HMGA1-206ENST00000478214 UNC119BA6NIH7 251 aa13.53□□□□□ -0.24
HMGA1-206ENST00000478214 CD14P08571 375 aa13.53□□□□□ -0.24
HMGA1-206ENST00000478214 OR8G3PP0DMU2 310 aa13.53□□□□□ -0.24
HMGA1-206ENST00000478214 CD99P14209 185 aa13.53□□□□□ -0.24
HMGA1-206ENST00000478214 GIPRP48546 466 aa13.53□□□□□ -0.24
HMGA1-206ENST00000478214 ZNF84P51523 738 aa13.53□□□□□ -0.24
HMGA1-206ENST00000478214 ATP5J2P56134 94 aa13.53□□□□□ -0.24
HMGA1-206ENST00000478214 RAB1AP62820 205 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms