RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 STACQ99469 402 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 SDF2Q99470 211 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 PRPF18Q99633 342 aaKnown RBP3.88□□□□□ -1.79
USP4-209ENST00000475873 TM2D3Q9BRN9 247 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 NAT9Q9BTE0 207 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 EGLN1Q9GZT9 426 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 HOXD1Q9GZZ0 328 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 MUC13Q9H3R2 512 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 GCM1Q9NP62 436 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 GPATCH2Q9NW75 528 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 ADPRHL2Q9NX46 363 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 MIOXQ9UGB7 285 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 PCDHGB4Q9UN71 923 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 HIF3AQ9Y2N7 669 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 GPR45Q9Y5Y3 372 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 DNAH17Q9UFH2 4485 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 TMEM238LA0A1B0GVL6 79 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 PRR23D1E9PI22 279 aaPredicted RBP3.87□□□□□ -1.79
USP4-209ENST00000475873 NPIPB7O75200 414 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 RAB36O95755 333 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 HSPA4LO95757 839 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 GPIP06744 558 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 INHBAP08476 426 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 PRR23D2P0DMB1 279 aaPredicted RBP3.87□□□□□ -1.79
USP4-209ENST00000475873 PNMTP11086 282 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 DRD4P21917 467 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 MYF6P23409 242 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 SAA4P35542 130 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 IDH2P48735 452 aaKnown RBP3.87□□□□□ -1.79
USP4-209ENST00000475873 LUMP51884 338 aaPredicted RBP3.87□□□□□ -1.79
USP4-209ENST00000475873 BTKQ06187 659 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 ACSM2AQ08AH3 577 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 TMED1Q13445 227 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 NFYCQ13952 458 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 GPR68Q15743 365 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 MBNL2Q5VZF2 373 aaKnown RBP3.87□□□□□ -1.79
USP4-209ENST00000475873 CARD17Q5XLA6 110 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 ACSM2BQ68CK6 577 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 TMEM225Q6GV28 225 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 ZCCHC12Q6PEW1 402 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 WDR88Q6ZMY6 472 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 C18orf65Q6ZTR6 163 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 VMO1Q7Z5L0 202 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 SATL1Q86VE3 508 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 C20orf196Q8IYI0 205 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 SYCE1Q8N0S2 351 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 GPR137CQ8N3F9 429 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 SPERTQ8NA61 448 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 CPEB3Q8NE35 698 aaKnown RBP3.87□□□□□ -1.79
USP4-209ENST00000475873 OR8B3Q8NGG8 313 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 OR5D16Q8NGK9 328 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 OR1J1Q8NGS3 322 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 ZNF563Q8TA94 476 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 RHEBL1Q8TAI7 183 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 SLC25A40Q8TBP6 338 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 CNOT9Q92600 299 aaKnown RBP3.87□□□□□ -1.79
USP4-209ENST00000475873 DPF1Q92782 380 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 ATP6V1E2Q96A05 226 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 DDIT4LQ96D03 193 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 PHF21BQ96EK2 531 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 PLEKHA8Q96JA3 519 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 SAMD8Q96LT4 415 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 OR8B2Q96RD0 313 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 OSBPL9Q96SU4 736 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 PTDSS2Q9BVG9 487 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 CDCA4Q9BXL8 241 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 OR2J1Q9GZK6 312 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 POFUT1Q9H488 388 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 NMRAL1Q9HBL8 299 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 MIEF1Q9NQG6 463 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 SIRT5Q9NXA8 310 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 PLA2G2EQ9NZK7 142 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 NOP53Q9NZM5 478 aaKnown RBP3.87□□□□□ -1.79
USP4-209ENST00000475873 CPSF2Q9P2I0 782 aaKnown RBP3.87□□□□□ -1.79
USP4-209ENST00000475873 RABL2AQ9UBK7 228 aaPredicted RBP3.87□□□□□ -1.79
USP4-209ENST00000475873 CLN8Q9UBY8 286 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 MKLN1Q9UL63 735 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 ZNF232Q9UNY5 417 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 PPP1R3CQ9UQK1 317 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 FAM96BQ9Y3D0 163 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 POLR3HQ9Y535 204 aaPredicted RBP3.87□□□□□ -1.79
USP4-209ENST00000475873 TNCP24821 2201 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 PKD1P98161 4303 aa3.87□□□□□ -1.79
USP4-209ENST00000475873 KIAA2026Q5HYC2 2103 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 IGHV3-64DA0A0J9YX35 117 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 A0A1B0GVY2 172 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 NPFFO15130 113 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 PDPK1O15530 556 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 SYNGR1O43759 233 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 OR10H3O60404 316 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 FZD7O75084 574 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 DEDDO75618 318 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 UBL3O95164 117 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 LY6G6CO95867 125 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 HPRP00739 348 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 IGF2P01344 180 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 RPS17P08708 135 aaKnown RBP3.86□□□□□ -1.79
USP4-209ENST00000475873 FRMD6-AS1P0C7T7 363 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 HLA-DOBP13765 273 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 HSD3B1P14060 373 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms