RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 XKRYO14609 159 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 GDF9O60383 454 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 RENP00797 406 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 SPARCP09486 303 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 H2AFB2P0C5Z0 115 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 HSF2Q03933 536 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 TMEM69Q5SWH9 247 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 MAMSTRQ6ZN01 415 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 ZNF574Q6ZN55 896 aaPredicted RBP17.22■□□□□ 0.35
VIM-203ENST00000469543 LRRTM1Q86UE6 522 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 HRASLSQ9HDD0 168 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 ZFP64Q9NPA5 681 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 MRTO4Q9UKD2 239 aaKnown RBP17.22■□□□□ 0.35
VIM-203ENST00000469543 B9D1Q9UPM9 204 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 FOXJ3Q9UPW0 622 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 C7orf66A4D0T2 115 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 MEIS3P1A6NDR6 274 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 NUDT21O43809 227 aaKnown RBP17.22■□□□□ 0.35
VIM-203ENST00000469543 CCR9P51686 369 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 YOD1Q5VVQ6 348 aaPredicted RBP17.22■□□□□ 0.35
VIM-203ENST00000469543 SLC29A4Q7RTT9 530 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 ZNF417Q8TAU3 575 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 ADAMTS14Q8WXS8 1223 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 ZNF587Q96SQ5 575 aaPredicted RBP17.22■□□□□ 0.35
VIM-203ENST00000469543 RAB33BQ9H082 229 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 SLA2Q9H6Q3 261 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 MYEF2Q9P2K5 600 aaKnown RBP17.22■□□□□ 0.35
VIM-203ENST00000469543 MGAT4AQ9UM21 535 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 NUBP2Q9Y5Y2 271 aa17.22■□□□□ 0.35
VIM-203ENST00000469543 TRAV36DV7A0A075B6V5 113 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 A0A1B0GX78 115 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 DUX1O43812 170 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 GP1BBP13224 206 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 STOMP27105 288 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 CCKBRP32239 447 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 VEGFCP49767 419 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 FMODQ06828 376 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 SMAD4Q13485 552 aaKnown RBP17.21■□□□□ 0.35
VIM-203ENST00000469543 COL28A1Q2UY09 1125 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 OR7E24Q6IFN5 339 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 BIVMQ86UB2 503 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 DND1Q8IYX4 353 aaKnown RBP17.21■□□□□ 0.35
VIM-203ENST00000469543 OR51D1Q8NGF3 324 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 OTOSQ8NHW6 89 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 STT3BQ8TCJ2 826 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 KLHL15Q96M94 604 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 CCDC85CA6NKD9 419 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 BCAT2O15382 392 aaPredicted RBP17.21■□□□□ 0.35
VIM-203ENST00000469543 ITGA10O75578 1167 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 CD1AP06126 327 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 GLB1P16278 677 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 INPP5JQ15735 1006 aaPredicted RBP17.21■□□□□ 0.35
VIM-203ENST00000469543 ASPHD2Q6ICH7 369 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 ARSKQ6UWY0 536 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 Q6ZTK2 550 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 LIX1LQ8IVB5 337 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 C9orf62Q8N4C0 152 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 WDR89Q96FK6 387 aaPredicted RBP17.21■□□□□ 0.35
VIM-203ENST00000469543 S100A16Q96FQ6 103 aaKnown RBP17.21■□□□□ 0.35
VIM-203ENST00000469543 C20orf85Q9H1P6 137 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 FKBP7Q9Y680 259 aa17.21■□□□□ 0.35
VIM-203ENST00000469543 PRSS37A4D1T9 235 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 SOX1O00570 391 aaPredicted RBP17.2■□□□□ 0.34
VIM-203ENST00000469543 ADAM10O14672 748 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 FADS1O60427 444 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 TRIM3O75382 744 aaPredicted RBP17.2■□□□□ 0.34
VIM-203ENST00000469543 MFGE8Q08431 387 aaPredicted RBP17.2■□□□□ 0.34
VIM-203ENST00000469543 C1orf140Q5VVS0 124 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 COX15Q7KZN9 410 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 CITED4Q96RK1 184 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 GTPBP2Q9BX10 602 aaKnown RBP17.2■□□□□ 0.34
VIM-203ENST00000469543 SLC7A5P2Q9GIP4 190 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 SYNDIG1Q9H7V2 258 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 NIPAL2Q9H841 368 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 AKIRIN1Q9H9L7 192 aaPredicted RBP17.2■□□□□ 0.34
VIM-203ENST00000469543 SUSD2Q9UGT4 822 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 CPED1A4D0V7 1026 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 ANXA2P2A6NMY6 339 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 SSNA1O43805 119 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 ANXA2P07355 339 aaKnown RBP17.2■□□□□ 0.34
VIM-203ENST00000469543 PGCP20142 388 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 SSTR2P30874 369 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 P2RX1P51575 399 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 RNF4P78317 190 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 FAM69AQ5T7M9 428 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 SDR16C5Q8N3Y7 309 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 PLPP7Q8NBV4 271 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 MVB12AQ96EY5 273 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 SLC41A2Q96JW4 573 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 MFRPQ9BY79 579 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 MED11Q9P086 117 aa17.2■□□□□ 0.34
VIM-203ENST00000469543 KHDRBS3O75525 346 aaKnown RBP17.19■□□□□ 0.34
VIM-203ENST00000469543 ITGA5P08648 1049 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 SELENOPP49908 381 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 ZP1P60852 638 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 ADAM8P78325 824 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 FOXK1P85037 733 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 C19orf57Q0VDD7 668 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 CBFBQ13951 182 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 MAMDC2Q7Z304 686 aaPredicted RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms