RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CST1P01037 141 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 IGHV3-9P01782 118 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 DANCRP0C864 163 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 COX5AP20674 150 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 AQP2P41181 271 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 SELENOPP49908 381 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 CCNIQ14094 377 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 GK3PQ14409 553 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 TAB1Q15750 504 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 PDLIM3Q53GG5 364 aaPredicted RBP10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 TSPO2Q5TGU0 170 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 CYB5R2Q6BCY4 276 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 ADAM5Q6NVV9 412 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 NHLRC1Q6VVB1 395 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 OAFQ86UD1 273 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 P2RY8Q86VZ1 359 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 UBE2J2Q8N2K1 259 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 OR4C15Q8NGM1 316 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 OR13C2Q8NGS9 318 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 SGMS2Q8NHU3 365 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 SLCO4A1Q96BD0 722 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 YY1AP1Q9H869 796 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 REEP1Q9H902 201 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 SLC7A10Q9NS82 523 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 VNN3Q9NY84 501 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 SAMHD1Q9Y3Z3 626 aaKnown RBP10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 TRAV27A0A087WT01 109 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 SLC35F4A4IF30 521 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 OR6C65A6NJZ3 312 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 CLOCKO15516 846 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 NDUFS7O75251 213 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 SLC43A1O75387 559 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 SOD3P08294 240 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 IFNGR1P15260 489 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 IGHV1-2P23083 117 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 IFNGR2P38484 337 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 PRPS1P60891 318 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 LOXL1Q08397 574 aaPredicted RBP10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 FAPQ12884 760 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 FHL1Q13642 323 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 TSC22D1Q15714 1073 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 ZBED5Q49AG3 693 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 ALG10Q5BKT4 473 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 NCMAPQ5T1S8 102 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 SLC35D2Q76EJ3 337 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 BHLHA15Q7RTS1 189 aaPredicted RBP10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 ZER1Q7Z7L7 766 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 TMEM123Q8N131 208 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 LINC00471Q8N535 108 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 POMGNT2Q8NAT1 580 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 OR51A7Q8NH64 312 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 MOSPD2Q8NHP6 518 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 ZMYND19Q96E35 227 aaPredicted RBP10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 DUS3LQ96G46 650 aaKnown RBP10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 TXNDC15Q96J42 360 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 ADAD1Q96M93 576 aaKnown RBP10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 OR2M2Q96R28 347 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 LINC00470Q9BZP3 86 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 BARX1Q9HBU1 254 aaPredicted RBP10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 INIPQ9NRY2 104 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 ASB6Q9NWX5 421 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 MED29Q9NX70 200 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 UPB1Q9UBR1 384 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 SIGLEC7Q9Y286 467 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 U3KQV3 271 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 MGAM2Q2M2H8 2515 aa10.41□□□□□ -0.74
SQSTM1-206ENST00000466342 IGHV4-30-2A0A087WSY4 118 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 A0A1W2PRG6 482 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 NPIPB13A6NJU9 1138 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 ZNF726A6NNF4 738 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 NPIPB4C9JG80 1138 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 PDLIM1O00151 329 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 LYZL6O75951 148 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 CCNB2O95067 398 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 F13BP05160 661 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 FPR3P25089 353 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 BIDP55957 195 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 PPP1R8Q12972 351 aaKnown RBP10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 LAPTM4AQ15012 233 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 TIMM23BQ5SRD1 257 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 ALKBH2Q6NS38 261 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 C1orf94Q6P1W5 598 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 PGBD2Q6P3X8 592 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 ABHD12BQ7Z5M8 362 aaPredicted RBP10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 LRRC75AQ8NAA5 344 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 OR10H5Q8NGA6 315 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 OR9Q2Q8NGE9 314 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 OR6X1Q8NH79 312 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 LILRB1Q8NHL6 650 aaPredicted RBP10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 GNPDA2Q8TDQ7 276 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 SMAP2Q8WU79 429 aaPredicted RBP10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 FBXW5Q969U6 566 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 MUCL1Q96DR8 90 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 ALKBH3Q96Q83 286 aaPredicted RBP10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 RAB3IPQ96QF0 476 aaPredicted RBP10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 EMC6Q9BV81 110 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 NDEL1Q9GZM8 345 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 ARMC1Q9NVT9 282 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 TAS2R16Q9NYV7 291 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 GDF2Q9UK05 429 aaPredicted RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms