RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 MNDAP41218 407 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 CCR9P51686 369 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 SUMO3P55854 103 aaPredicted RBP13.59□□□□□ -0.23
LDLR-202ENST00000455727 MRPS10P82664 201 aaKnown RBP13.59□□□□□ -0.23
LDLR-202ENST00000455727 INSM1Q01101 510 aaPredicted RBP13.59□□□□□ -0.23
LDLR-202ENST00000455727 ROM1Q03395 351 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 SNTB2Q13425 540 aaKnown RBP13.59□□□□□ -0.23
LDLR-202ENST00000455727 NKAIN1Q4KMZ8 207 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 SHISA6Q6ZSJ9 500 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 PRSS45Q7RTY3 260 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 KANSL1Q7Z3B3 1105 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 ZNF676Q8N7Q3 588 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 ZFAND1Q8TCF1 268 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 C15orf40Q8WUR7 153 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 C4orf45Q96LM5 186 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 SLCO1C1Q9NYB5 712 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 OR5V1Q9UGF6 321 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 KCNG2Q9UJ96 466 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 SDK1Q7Z5N4 2213 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 IGHV3-20A0A0C4DH32 117 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 SLC22A23A1A5C7 686 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 FTCDNL1E5RQL4 147 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 GPR171O14626 319 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 ECDO95905 644 aaPredicted RBP13.58□□□□□ -0.23
LDLR-202ENST00000455727 ONECUT2O95948 504 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 HEXBP07686 556 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 ADRB1P08588 477 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 NAGAP17050 411 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 ADRA2CP18825 462 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 GIFP27352 417 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 CFPP27918 469 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 ZP4Q12836 540 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 SLC17A1Q14916 467 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 TEX30Q5JUR7 227 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 BCL2L15Q5TBC7 163 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 PLCZ1Q86YW0 608 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 ZNF679Q8IYX0 411 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 PRSS35Q8N3Z0 413 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 SLC38A9Q8NBW4 561 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 MCHR2Q969V1 340 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 MIB2Q96AX9 1013 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 OR2M2Q96R28 347 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 ACTR6Q9GZN1 396 aa13.58□□□□□ -0.23
LDLR-202ENST00000455727 PLGP00747 810 aaPredicted RBP13.58□□□□□ -0.24
LDLR-202ENST00000455727 EPHA8P29322 1005 aaPredicted RBP13.58□□□□□ -0.24
LDLR-202ENST00000455727 GDNFP39905 211 aa13.58□□□□□ -0.24
LDLR-202ENST00000455727 MFSD13AQ14CX5 517 aa13.58□□□□□ -0.24
LDLR-202ENST00000455727 SLC18B1Q6NT16 456 aa13.58□□□□□ -0.24
LDLR-202ENST00000455727 BTN2A1Q7KYR7 527 aa13.58□□□□□ -0.24
LDLR-202ENST00000455727 DND1Q8IYX4 353 aaKnown RBP13.58□□□□□ -0.24
LDLR-202ENST00000455727 HAVCR1Q96D42 359 aa13.58□□□□□ -0.24
LDLR-202ENST00000455727 AMELYQ99218 206 aa13.58□□□□□ -0.24
LDLR-202ENST00000455727 ATXN7L1Q9ULK2 861 aaPredicted RBP13.58□□□□□ -0.24
LDLR-202ENST00000455727 BOLA1Q9Y3E2 137 aa13.58□□□□□ -0.24
LDLR-202ENST00000455727 TRAV6A0A075B6T7 132 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 A0A1B0GTH9 108 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 SLC16A7O60669 478 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 ALOX12BO75342 701 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 LDOC1O95751 146 aaPredicted RBP13.57□□□□□ -0.24
LDLR-202ENST00000455727 GPANK1O95872 356 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 HLA-DQA2P01906 255 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 CRABP1P29762 137 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 APOBEC1P41238 236 aaKnown RBP13.57□□□□□ -0.24
LDLR-202ENST00000455727 RPS27P42677 84 aaKnown RBP13.57□□□□□ -0.24
LDLR-202ENST00000455727 SOX2P48431 317 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 ART1P52961 327 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 NR0B2Q15466 257 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 ZNF248Q8NDW4 579 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 OR8K3Q8NH51 312 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 RNF128Q8TEB7 428 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 RNF138Q8WVD3 245 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 HGDQ93099 445 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 OR6C1Q96RD1 312 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 ZNF587Q96SQ5 575 aaPredicted RBP13.57□□□□□ -0.24
LDLR-202ENST00000455727 GON7Q9BXV9 100 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 OR11A1Q9GZK7 315 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 MED28Q9H204 178 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 ELOVL3Q9HB03 270 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 PLSCR3Q9NRY6 295 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 MRPL22Q9NWU5 206 aaKnown RBP13.57□□□□□ -0.24
LDLR-202ENST00000455727 KLHL9Q9P2J3 617 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 FOXJ3Q9UPW0 622 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 NPIPB13A6NJU9 1138 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 NPIPB4C9JG80 1138 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 KIR3DL2P43630 455 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 PTH2RP49190 550 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 AP3S2P59780 193 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 DCDP81605 110 aaKnown RBP13.57□□□□□ -0.24
LDLR-202ENST00000455727 MEP1BQ16820 701 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 CD276Q5ZPR3 534 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 KCTD18Q6PI47 426 aaPredicted RBP13.57□□□□□ -0.24
LDLR-202ENST00000455727 LINGO2Q7L985 606 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 IZUMO1Q8IYV9 350 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 ZNF454Q8N9F8 522 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 MFSD8Q8NHS3 518 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 SYNPRQ8TBG9 265 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 TTC9Q92623 222 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 TMEM106AQ96A25 262 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 C8orf44Q96CB5 159 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms