RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 DHFR2Q86XF0 187 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 ZDHHC21Q8IVQ6 265 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 WDFY1Q8IWB7 410 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 OR51A7Q8NH64 312 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 MAGEE2Q8TD90 523 aaPredicted RBP12.72□□□□□ -0.37
USP39-206ENST00000448971 BCL2L2Q92843 193 aaPredicted RBP12.72□□□□□ -0.37
USP39-206ENST00000448971 NEUROG1Q92886 237 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 ZNF837Q96EG3 531 aaPredicted RBP12.72□□□□□ -0.37
USP39-206ENST00000448971 PERPQ96FX8 193 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 FAM46AQ96IP4 442 aaKnown RBP12.72□□□□□ -0.37
USP39-206ENST00000448971 LRGUKQ96M69 825 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 SEPHS2Q99611 448 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 FOXB1Q99853 325 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 KCNS3Q9BQ31 491 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 THTPAQ9BU02 230 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 GSX2Q9BZM3 304 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 C1orf21Q9H246 121 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 NELFAQ9H3P2 528 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 TAS2R1Q9NYW7 299 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 GLTPQ9NZD2 209 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 STX18Q9P2W9 335 aaKnown RBP12.72□□□□□ -0.37
USP39-206ENST00000448971 MGAT4BQ9UQ53 548 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 CHD3Q12873 2000 aaKnown RBP12.71□□□□□ -0.37
USP39-206ENST00000448971 ARPC4-TTLL3A0A0A6YYG9 625 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 TRBV4-1A0A0J9YWV2 114 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 GYG2O15488 501 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 PGA4P0DJD7 388 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 PGA3P0DJD8 388 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 RRM2P31350 389 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 SMIM11AP58511 58 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 RPS4XP62701 263 aaKnown RBP12.71□□□□□ -0.37
USP39-206ENST00000448971 TAF11Q15544 211 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 ZNF672Q499Z4 452 aaPredicted RBP12.71□□□□□ -0.37
USP39-206ENST00000448971 LCN8Q6JVE9 175 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 NHLRC1Q6VVB1 395 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 DEPDC4Q8N2C3 294 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 ZNF611Q8N823 705 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 OR4K5Q8NGD3 323 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 ASB10Q8WXI3 467 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 NANOS1Q8WY41 292 aaKnown RBP12.71□□□□□ -0.37
USP39-206ENST00000448971 TMEM54Q969K7 222 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 ASB9Q96DX5 294 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 BOD1Q96IK1 185 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 RADILQ96JH8 1075 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 CLPTM1LQ96KA5 538 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 TRIM15Q9C019 465 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 AURKCQ9UQB9 309 aa12.71□□□□□ -0.37
USP39-206ENST00000448971 NBEAL1Q6ZS30 2694 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 SHISA9B4DS77 424 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 CDC42EP2O14613 210 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 NR2C1P13056 603 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 PAX1P15863 534 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 RPL4P36578 427 aaKnown RBP12.7□□□□□ -0.38
USP39-206ENST00000448971 CTXN1P60606 82 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 PPP2R2BQ00005 443 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 MYBPC1Q00872 1141 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 CD47Q08722 323 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 NPRL3Q12980 569 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 TRIM25Q14258 630 aaKnown RBP12.7□□□□□ -0.38
USP39-206ENST00000448971 LAPTM4AQ15012 233 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 ANKDD1AQ495B1 522 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 TMEM171Q8WVE6 324 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 DHRS1Q96LJ7 313 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 SLC38A2Q96QD8 506 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 ZNF347Q96SE7 839 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 MOV10Q9HCE1 1003 aaKnown RBP12.7□□□□□ -0.38
USP39-206ENST00000448971 IL1RAPQ9NPH3 570 aa12.7□□□□□ -0.38
USP39-206ENST00000448971 CUBNO60494 3623 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 IGHV1-18A0A0C4DH31 117 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 NPIPB13A6NJU9 1138 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 NPIPB4C9JG80 1138 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 ATP6V1G2-DDX39BF2Z307 99 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 OR10H3O60404 316 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 TRMUO75648 421 aaKnown RBP12.69□□□□□ -0.38
USP39-206ENST00000448971 QDPRP09417 244 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 TSPAN19P0C672 248 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 CD79AP11912 226 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 ACADSP16219 412 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 PAX7P23759 505 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 PTH2RP49190 550 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 ZNF84P51523 738 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 IDH3GP51553 393 aaPredicted RBP12.69□□□□□ -0.38
USP39-206ENST00000448971 RUNX1T1Q06455 604 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 KRTAP1-1Q07627 177 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 SEC23BQ15437 767 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 FAM98BQ52LJ0 330 aaKnown RBP12.69□□□□□ -0.38
USP39-206ENST00000448971 FAM205BPQ63HN1 556 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 TMPRSS11FQ6ZWK6 438 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 SYT14Q8NB59 555 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 LILRB1Q8NHL6 650 aaPredicted RBP12.69□□□□□ -0.38
USP39-206ENST00000448971 RSRC1Q96IZ7 334 aaKnown RBP12.69□□□□□ -0.38
USP39-206ENST00000448971 TNFRSF13CQ96RJ3 184 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 TXNIPQ9H3M7 391 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 CXorf56Q9H5V9 222 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 FAIMQ9NVQ4 179 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 CISD1Q9NZ45 108 aaKnown RBP12.69□□□□□ -0.38
USP39-206ENST00000448971 TMCC3Q9ULS5 477 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 LAMP3Q9UQV4 416 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 ATP23Q9Y6H3 246 aa12.69□□□□□ -0.38
USP39-206ENST00000448971 TCRBV5S2A0A599 114 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms