RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 IGHV2OR16-5A0A0B4J2B6 119 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 NPIPB13A6NJU9 1138 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 CENPBD1B2RD01 187 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 NPIPB4C9JG80 1138 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 hCG_2039718K7EN88 272 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 SMAD7O15105 426 aaKnown RBP11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 DIRAS1O95057 198 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 H1F0P07305 194 aaKnown RBP11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 PATE4P0C8F1 98 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 RHCEP18577 417 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 ACVR1BP36896 505 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 GIPRP48546 466 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 RAB1AP62820 205 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 MXRA7P84157 204 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 VLDLRP98155 873 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 TNK1Q13470 666 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 SWI5Q1ZZU3 235 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 CLEC12BQ2HXU8 276 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 IQCCQ4KMZ1 466 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 PODNL1Q6PEZ8 512 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 C16orf89Q6UX73 402 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 TMPRSS11FQ6ZWK6 438 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 BIVMQ86UB2 503 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 OAFQ86UD1 273 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 IGFN1Q86VF2 1251 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 CDK20Q8IZL9 346 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 SLC22A24Q8N4F4 322 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 LRRC75AQ8NAA5 344 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 CCDC197Q8NCU1 140 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 NOXO1Q8NFA2 376 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 IL17RDQ8NFM7 739 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 OR4F15Q8NGB8 312 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 OR13C2Q8NGS9 318 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 HTRA1Q92743 480 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 HDAC2Q92769 488 aaKnown RBP11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 FBXO17Q96EF6 278 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 MS4A3Q96HJ5 214 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 PYURFQ96I23 114 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 NSL1Q96IY1 281 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 COX4I2Q96KJ9 171 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 ANKRD19PQ9H560 264 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 CA10Q9NS85 328 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 TMEM38BQ9NVV0 291 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 NDE1Q9NXR1 346 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 MAGEL2Q9UJ55 1249 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 ZNF346Q9UL40 294 aaKnown RBP11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 V9GYQ6 96 aa11.05□□□□□ -0.64
PRPF40A-203ENST00000448428 A0A1W2PRQ8 180 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 B2RBV5 119 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 CDC42EP2O14613 210 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 ARPC2O15144 300 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 SEMG1P04279 462 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 OR8G3PP0DMU2 310 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 ZNF14P17017 642 aaPredicted RBP11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 SERPINF1P36955 418 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 GPR4P46093 362 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 PTDSS1P48651 473 aaKnown RBP11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 SLC9A3P48764 834 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 MNAT1P51948 309 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 ZNF133P52736 654 aaPredicted RBP11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 CTXN1P60606 82 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 CHRNB3Q05901 458 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 TOP3AQ13472 1001 aaPredicted RBP11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 DGCR6Q14129 220 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 ETFDHQ16134 617 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 ANKDD1AQ495B1 522 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 SPATS1Q496A3 300 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 VHLLQ6RSH7 139 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 DNM1P46Q6ZS02 220 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 RRM2BQ7LG56 351 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 HDDC2Q7Z4H3 204 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 NANOS1Q8WY41 292 aaKnown RBP11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 NMD3Q96D46 503 aaKnown RBP11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 NSMCE2Q96MF7 247 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 KCNK17Q96T54 332 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 SH3GL3Q99963 347 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 DENND2DQ9H6A0 471 aaPredicted RBP11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 STX18Q9P2W9 335 aaKnown RBP11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 ADAM21Q9UKJ8 722 aa11.04□□□□□ -0.64
PRPF40A-203ENST00000448428 VPS13CQ709C8 3753 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 FLNAP21333 2647 aaKnown RBP11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 TRBV4-1A0A0J9YWV2 114 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 H7C417 338 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 SSX4O60224 188 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 UBL3O95164 117 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 LY6G6DO95868 133 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 IGHMP01871 453 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 OR4A8P0C604 315 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 T-ENOLP0DO92 83 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 ZNF35P13682 527 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 ZNF26P17031 533 aaPredicted RBP11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 THBS4P35443 961 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 ZNF84P51523 738 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 RPL27P61353 136 aaKnown RBP11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 RAB39AQ14964 217 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 RAB35Q15286 201 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 SEC23BQ15437 767 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 TAF11Q15544 211 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 ADIPOQQ15848 244 aa11.03□□□□□ -0.64
PRPF40A-203ENST00000448428 ZBED5Q49AG3 693 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms