RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 FMODQ06828 376 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 PIGFQ07326 219 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 OR2T5Q6IEZ7 315 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 CLDN22Q8N7P3 220 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 OR2T29Q8NH02 315 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 GNPDA2Q8TDQ7 276 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 NSMAFQ92636 917 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 NINJ1Q92982 152 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 Q96M85 177 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 REEP1Q9H902 201 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 VNN3Q9NY84 501 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 GRHPRQ9UBQ7 328 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 SLC7A8Q9UHI5 535 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 MGAT4BQ9UQ53 548 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 LRBAP50851 2863 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 IGHV1-18A0A0C4DH31 117 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 ZNF503-AS2A6NEH8 195 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 NPIPB13A6NJU9 1138 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 SHISA9B4DS77 424 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 NPIPB4C9JG80 1138 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 H7C1C5 153 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 HLA-HP01893 362 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 CD14P08571 375 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 CD53P19397 219 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 ZNF84P51523 738 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 ART1P52961 327 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 CDH11P55287 796 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 LCN6P62502 163 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 NPRL3Q12980 569 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 HIST3H3Q16695 136 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 ZNF672Q499Z4 452 aaPredicted RBP16.27■□□□□ 0.2
SHH-204ENST00000441114 PGBD2Q6P3X8 592 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 THSD4Q6ZMP0 1018 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 MDP1Q86V88 176 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 DEPDC4Q8N2C3 294 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 OR9Q2Q8NGE9 314 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 ZNF519Q8TB69 540 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 ZNF570Q96NI8 536 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 SLC38A2Q96QD8 506 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 KCNK17Q96T54 332 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 CCL19Q99731 98 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 SAMHD1Q9Y3Z3 626 aaKnown RBP16.27■□□□□ 0.2
SHH-204ENST00000441114 ATP23Q9Y6H3 246 aa16.27■□□□□ 0.2
SHH-204ENST00000441114 TEX15Q9BXT5 2789 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 A6NIZ1 184 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 CENPBD1B2RD01 187 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 GNGT2O14610 69 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 CCNB2O95067 398 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 CST1P01037 141 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 CELA3BP08861 270 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 CBR1P16152 277 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 IDH3GP51553 393 aaPredicted RBP16.26■□□□□ 0.19
SHH-204ENST00000441114 HMGA2P52926 109 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 FXYD6P3P58550 94 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 RAP1BP61224 184 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 RAP1AP62834 184 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 C1QTNF12Q5T7M4 302 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 FAM205BPQ63HN1 556 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 C1orf94Q6P1W5 598 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 SMARCD3Q6STE5 483 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 C20orf204Q6ZNR8 217 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 CCDC121Q6ZUS5 278 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 SKA3Q8IX90 412 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 SLC22A24Q8N4F4 322 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 ARIH2OSQ8N7S6 290 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 OR4C15Q8NGM1 316 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 FANK1Q8TC84 345 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 FBXW5Q969U6 566 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 RASD2Q96D21 266 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 RBP7Q96R05 134 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 SH3GL3Q99963 347 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 KCNS3Q9BQ31 491 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 ALG12Q9BV10 488 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 SEC61A2Q9H9S3 476 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 TMEM38BQ9NVV0 291 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 CISD1Q9NZ45 108 aaKnown RBP16.26■□□□□ 0.19
SHH-204ENST00000441114 MOKQ9UQ07 419 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 IER3IP1Q9Y5U9 82 aa16.26■□□□□ 0.19
SHH-204ENST00000441114 SPG11Q96JI7 2443 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 CADP27708 2225 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 IGKV1D-43A0A0B4J1Z2 117 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 TEX13CA0A0J9YWL9 993 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 ATP6V1G2-DDX39BF2Z307 99 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 SOCS2O14508 198 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 XKRYO14609 159 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 PPP1R3DO95685 299 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 PATE4P0C8F1 98 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 OR8G3PP0DMU2 310 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 FPR3P25089 353 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 CDAP32320 146 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 DEFB113Q30KQ7 82 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 ZNF627Q7L945 461 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 CCDC36Q8IYA8 594 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 ZNF611Q8N823 705 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 NANOS1Q8WY41 292 aaKnown RBP16.25■□□□□ 0.19
SHH-204ENST00000441114 SAMD8Q96LT4 415 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 LRMDAQ9H2I8 198 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 OR52D1Q9H346 318 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 NOX3Q9HBY0 568 aa16.25■□□□□ 0.19
SHH-204ENST00000441114 TCRBV3S1A0A5B6 114 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms