RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 FSTP19883 344 aa12.37□□□□□ -0.43
COL6A3-207ENST00000433762 GRPRP30550 384 aa12.37□□□□□ -0.43
COL6A3-207ENST00000433762 RGS19P49795 217 aa12.37□□□□□ -0.43
COL6A3-207ENST00000433762 OPCMLQ14982 345 aa12.37□□□□□ -0.43
COL6A3-207ENST00000433762 B3GNTL1Q67FW5 361 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-207ENST00000433762 FAM166AQ6J272 317 aa12.37□□□□□ -0.43
COL6A3-207ENST00000433762 CBLN3Q6UW01 205 aa12.37□□□□□ -0.43
COL6A3-207ENST00000433762 ZNF454Q8N9F8 522 aa12.37□□□□□ -0.43
COL6A3-207ENST00000433762 ZNF563Q8TA94 476 aa12.37□□□□□ -0.43
COL6A3-207ENST00000433762 RNF128Q8TEB7 428 aa12.37□□□□□ -0.43
COL6A3-207ENST00000433762 TAAR8Q969N4 342 aa12.37□□□□□ -0.43
COL6A3-207ENST00000433762 TMEM106AQ96A25 262 aa12.37□□□□□ -0.43
COL6A3-207ENST00000433762 KTI12Q96EK9 354 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-207ENST00000433762 TSSK2Q96PF2 358 aa12.37□□□□□ -0.43
COL6A3-207ENST00000433762 SEMA4CQ9C0C4 833 aa12.37□□□□□ -0.43
COL6A3-207ENST00000433762 NXF5Q9H1B4 397 aaKnown RBP12.37□□□□□ -0.43
COL6A3-207ENST00000433762 ZNF576Q9H609 170 aa12.37□□□□□ -0.43
COL6A3-207ENST00000433762 TNRC18O15417 2968 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-207ENST00000433762 DCTN6O00399 190 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 XKRYO14609 159 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 SYPP08247 313 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 NME1P15531 152 aaKnown RBP12.36□□□□□ -0.43
COL6A3-207ENST00000433762 PGCP20142 388 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 ITPKBP27987 946 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 DCTDP32321 178 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 RAD52P43351 418 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 CCR4P51679 360 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 CLDN12P56749 244 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 PSMA6P60900 246 aaKnown RBP12.36□□□□□ -0.43
COL6A3-207ENST00000433762 ERV3-1Q14264 604 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 SLC17A1Q14916 467 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 ELAVL1Q15717 326 aaKnown RBP12.36□□□□□ -0.43
COL6A3-207ENST00000433762 TMEM31Q5JXX7 168 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 SLC36A1Q7Z2H8 476 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 ADGRG3Q86Y34 549 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 TMEM151BQ8IW70 566 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 ZNF679Q8IYX0 411 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 ZNF519Q8TB69 540 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 ORAI1Q96D31 301 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 SRA1Q9HD15 236 aaKnown RBP12.36□□□□□ -0.43
COL6A3-207ENST00000433762 MYOZ1Q9NP98 299 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-207ENST00000433762 CDV3Q9UKY7 258 aaKnown RBP12.36□□□□□ -0.43
COL6A3-207ENST00000433762 ZNF346Q9UL40 294 aaKnown RBP12.36□□□□□ -0.43
COL6A3-207ENST00000433762 TP53BP1Q12888 1972 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-207ENST00000433762 LOC100289279A0A1B0GTE1 492 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 CTAG2O75638 210 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 F13BP05160 661 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 CXCR1P25024 350 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 CALCRP30988 508 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 KIR3DL2P43630 455 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 ACTBP60709 375 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 ACTG1P63261 375 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 ZNF542PQ5EBM4 170 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 SLC18B1Q6NT16 456 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 MTFR2Q6P444 385 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 KCTD18Q6PI47 426 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-207ENST00000433762 SERPINA12Q8IW75 414 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 PRSS35Q8N3Z0 413 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 PNPLA2Q96AD5 504 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 SLCO5A1Q9H2Y9 848 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 SCPEP1Q9HB40 452 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 SLC2A4RGQ9NR83 387 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 MRPL15Q9P015 296 aaKnown RBP12.36□□□□□ -0.43
COL6A3-207ENST00000433762 PCDHGA5Q9Y5G8 931 aa12.36□□□□□ -0.43
COL6A3-207ENST00000433762 LAMA3Q16787 3333 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 TRAV8-7A0A075B6U6 113 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 OR6C76A6NM76 312 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 FAM171A2A8MVW0 826 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 PSMD9O00233 223 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 NPIPB7O75200 414 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 ALDOBP05062 364 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 AKAIN1P0CW23 69 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 MAZP56270 477 aaKnown RBP12.35□□□□□ -0.43
COL6A3-207ENST00000433762 RPL27P61353 136 aaKnown RBP12.35□□□□□ -0.43
COL6A3-207ENST00000433762 ZNF117Q03924 483 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 C1orf61Q13536 156 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 NHLRC3Q5JS37 347 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 RFPL4BQ6ZWI9 263 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 DPY19L4Q7Z388 723 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 KRT77Q7Z794 578 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 LSRQ86X29 649 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-207ENST00000433762 NAXDQ8IW45 347 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 GATSQ8NAP1 163 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 STK35Q8TDR2 534 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 ZNF721Q8TF20 911 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 TXNIPQ9H3M7 391 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 ZNF69Q9UC07 566 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 KCNN3Q9UGI6 736 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 CIB4A0PJX0 185 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 PRSS37A4D1T9 235 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 MEGF11A6BM72 1044 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 TSPAN2O60636 221 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 B3GALNT1O75752 331 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 DXOO77932 396 aaKnown RBP12.35□□□□□ -0.43
COL6A3-207ENST00000433762 DDAH2O95865 285 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 NFYAP23511 347 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-207ENST00000433762 SOX2P48431 317 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 MAP2K6P52564 334 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 PNLIPRP2P54317 469 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 RAB11BQ15907 218 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms