RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ZNF546Q86UE3 836 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 COX18Q8N8Q8 333 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 DMBX1Q8NFW5 382 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 FBLIM1Q8WUP2 373 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 DNASE2BQ8WZ79 361 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 HIST1H2BAQ96A08 127 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 NUDT11Q96G61 164 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 THOC3Q96J01 351 aaKnown RBP8.99□□□□□ -0.97
USP54-205ENST00000424265 Q9N2J8 555 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 IRGMA1A4Y4 181 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 C1QAP02745 245 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 HLA-DPB1P04440 258 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 UCHL1P09936 223 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 NPPBP16860 134 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 CD200P41217 278 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 OR3A1P47881 315 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 MLLT11Q13015 90 aaPredicted RBP8.99□□□□□ -0.97
USP54-205ENST00000424265 HLA-BQ31612 363 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 DEFB134Q4QY38 66 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 PYY3Q5JQD4 70 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 CXXC5Q7LFL8 322 aaKnown RBP8.99□□□□□ -0.97
USP54-205ENST00000424265 OR1S2Q8NGQ3 325 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 MVB12AQ96EY5 273 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 HRASLS5Q96KN8 279 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 PHB2Q99623 299 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 SLC35A5Q9BS91 424 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 LHX9Q9NQ69 397 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 GPR45Q9Y5Y3 372 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 TMEM235A6NFC5 223 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 TAPBPO15533 448 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 EMC8O43402 210 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 HEXAP06865 529 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 IL3P08700 152 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 NPSP0C0P6 89 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 CD82P27701 267 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 SLC26A5P58743 744 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 ATXN7L3Q14CW9 347 aaPredicted RBP8.98□□□□□ -0.97
USP54-205ENST00000424265 TAF13Q15543 124 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 SLC9A3R2Q15599 337 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 PLEKHN1Q494U1 663 aaPredicted RBP8.98□□□□□ -0.97
USP54-205ENST00000424265 FAM83HQ6ZRV2 1179 aaPredicted RBP8.98□□□□□ -0.97
USP54-205ENST00000424265 SIAH3Q8IW03 269 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 LAS2Q8IYD9 372 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 WFIKKN1Q96NZ8 548 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 IL4I1Q96RQ9 567 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 GABARAPL1Q9H0R8 117 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 UBQLN3Q9H347 655 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 FN3KRPQ9HA64 309 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 MAN2C1Q9NTJ4 1040 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 GGT3PA6NGU5 568 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 PRODHO43272 600 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 IGF2P01344 180 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 HLA-DQB1P01920 261 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 TACR3P29371 465 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 RBM34P42696 430 aaKnown RBP8.98□□□□□ -0.97
USP54-205ENST00000424265 C18orf21Q32NC0 220 aaPredicted RBP8.98□□□□□ -0.97
USP54-205ENST00000424265 OR4F3Q6IEY1 312 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 TMPRSS7Q7RTY8 843 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 OR4C5Q8NGB2 326 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 OR5L2Q8NGL0 311 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 WNT2BQ93097 391 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 ZNF354BQ96LW1 612 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 MRI1Q9BV20 369 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 TWSG1Q9GZX9 223 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 ARRDC1-AS1Q9H2J1 176 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 HRH4Q9H3N8 390 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 FARSAQ9Y285 508 aaKnown RBP8.98□□□□□ -0.97
USP54-205ENST00000424265 LOC100509620A0A075B734 347 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 FEZF1A0PJY2 475 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 A6NJY4 79 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 NRG2O14511 850 aaPredicted RBP8.98□□□□□ -0.97
USP54-205ENST00000424265 SCGNO76038 276 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 IGHV4-34P06331 123 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 DTYMKP23919 212 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 IL12BP29460 328 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 CD96P40200 585 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 FASLGP48023 281 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 GAGE1Q13065 139 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 EIF3IQ13347 325 aaKnown RBP8.98□□□□□ -0.97
USP54-205ENST00000424265 PLA1AQ53H76 456 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 ZNF628Q5EBL2 1059 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 OR2A2Q6IF42 318 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 TSSK4Q6SA08 328 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 CD163Q86VB7 1156 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 MCEMP1Q8IX19 187 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 ZNF595Q8IYB9 648 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 PNPLA1Q8N8W4 532 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 OR52J3Q8NH60 311 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 MS4A8Q9BY19 250 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 MEPEQ9NQ76 525 aaPredicted RBP8.98□□□□□ -0.97
USP54-205ENST00000424265 ZDHHC8Q9ULC8 765 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 PTGDR2Q9Y5Y4 395 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 KPTNQ9Y664 436 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 FXYD1O00168 92 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 NAA10P41227 235 aaPredicted RBP8.98□□□□□ -0.97
USP54-205ENST00000424265 PGGT1BP53609 377 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 CSNK1G2P78368 415 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 FAM199XQ6PEV8 388 aaPredicted RBP8.98□□□□□ -0.97
USP54-205ENST00000424265 BEST3Q8N1M1 668 aa8.98□□□□□ -0.97
USP54-205ENST00000424265 BPIFB2Q8N4F0 458 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms