RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 MRPS24Q96EL2 167 aaKnown RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 YTHDF2Q9Y5A9 579 aaKnown RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF318Q5VUA4 2279 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 HEATR5BQ9P2D3 2071 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 HS3ST1O14792 307 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 ITGAMP11215 1152 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 MAGEB1P43366 347 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 SRP9P49458 86 aaKnown RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 PGGHGQ32M88 737 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 YIF1BQ5BJH7 314 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 NXNL2Q5VZ03 156 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 LETMD1Q6P1Q0 360 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 PAPD4Q6PIY7 484 aaKnown RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 HSD11B1LQ7Z5J1 315 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 WFDC8Q8IUA0 241 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 REEP6Q96HR9 211 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 AKR1E2Q96JD6 320 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 ESRP2Q9H6T0 727 aaKnown RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 LIN7CQ9NUP9 197 aaKnown RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 MARCH4Q9P2E8 410 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 TMED7-TICAM2A0A0A6YYA0 188 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 ARPC4-TTLL3A0A0A6YYG9 625 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 ARPC1BO15143 372 aaKnown RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 EIF2DP41214 584 aaKnown RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 BTNL8Q6UX41 500 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 PARS2Q7L3T8 475 aaKnown RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 PRSS35Q8N3Z0 413 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 UBAC2Q8NBM4 344 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF300Q96RE9 604 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 FGF21Q9NSA1 209 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 DCAF13Q9NV06 445 aaKnown RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 TMED7Q9Y3B3 224 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 COL16A1Q07092 1604 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 J3QR89 54 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 K7EQS6 105 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 ARHGAP33O14559 1287 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 VAMP5O95183 116 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 FBP1P09467 338 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 CSF3P09919 207 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 CPEP16870 476 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 GJA4P35212 333 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 OR1D5P58170 312 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 MFSD12Q6NUT3 480 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 C15orf39Q6ZRI6 1047 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 MAML2Q8IZL2 1156 aaPredicted RBP6.34□□□□□ -1.4
SCN1A-204ENST00000423058 C17orf78Q8N4C9 275 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 SEMA6DQ8NFY4 1073 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 FAM213BQ8TBF2 198 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 CA5BP1Q8WTZ4 195 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 CTRCQ99895 268 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 ARPC5LQ9BPX5 153 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 JAM3Q9BX67 310 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 DDX31Q9H8H2 851 aaKnown RBP6.34□□□□□ -1.4
SCN1A-204ENST00000423058 MOB1AQ9H8S9 216 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 DLL4Q9NR61 685 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 CD300AQ9UGN4 299 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 RGPD4Q7Z3J3 1758 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 ARPC3O15145 178 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 MBP02144 154 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 PRKACAP17612 351 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 MGAT3Q09327 533 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 C17orf107Q6ZR85 190 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 GPRIN1Q7Z2K8 1008 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 LSRQ86X29 649 aaPredicted RBP6.34□□□□□ -1.4
SCN1A-204ENST00000423058 LFNGQ8NES3 379 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 OR2T11Q8NH01 316 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 TMEM230Q96A57 120 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 PGAP2Q9UHJ9 254 aa6.34□□□□□ -1.4
SCN1A-204ENST00000423058 PURGQ9UJV8 347 aaKnown RBP6.34□□□□□ -1.4
SCN1A-204ENST00000423058 ZNF749O43361 778 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 CYTIPO60759 359 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 AREGP15514 252 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 TGM1P22735 817 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 OMGP23515 440 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 AOAHP28039 575 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 PMPCAQ10713 525 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 RANBP10Q6VN20 620 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 ISCA2Q86U28 154 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 LACC1Q8IV20 430 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 OR2M7Q8NG81 312 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 WWTR1Q9GZV5 400 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 XYLT2Q9H1B5 865 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 PTGDR2Q9Y5Y4 395 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 HCFC2Q9Y5Z7 792 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 MYO16Q9Y6X6 1858 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 F13BP05160 661 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 SLC9A3R2Q15599 337 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 THEM4Q5T1C6 240 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 ZNF836Q6ZNA1 936 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 MED25Q71SY5 747 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 SPRED1Q7Z699 444 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 CLEC14AQ86T13 490 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 MFSD4AQ8N468 514 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 WBP2Q969T9 261 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 UTP4Q969X6 686 aaKnown RBP6.33□□□□□ -1.4
SCN1A-204ENST00000423058 GORASP2Q9H8Y8 452 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 BABAM2Q9NXR7 383 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 APC2O95996 2303 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 RPS10-NUDT3A0A1W2PQS6 291 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 ATP6V1G2-DDX39BF2Z307 99 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms