RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 CCDC80Q76M96 950 aa9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 TSPYL5Q86VY4 417 aaPredicted RBP9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 SLC22A24Q8N4F4 322 aa9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 LINC01356Q8N9X3 169 aa9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 NOXO1Q8NFA2 376 aa9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 OR8J3Q8NGG0 315 aa9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 SNX18Q96RF0 628 aa9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 SH3GL1Q99961 368 aa9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 SYT3Q9BQG1 590 aa9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 SOX7Q9BT81 388 aa9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 POLR2J2Q9GZM3 115 aaKnown RBP9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 POLR2J3Q9H1A7 115 aaKnown RBP9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 ARGLU1Q9NWB6 273 aaPredicted RBP9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 BAG5Q9UL15 447 aa9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 ZNF346Q9UL40 294 aaKnown RBP9.94□□□□□ -0.82
SQSTM1-203ENST00000422245 A0A1W2PPW3 197 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 A0A1W2PRG6 482 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 BBIP1A8MTZ0 92 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 MCIDASD6RGH6 385 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 OR5F1O95221 314 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 BCL10O95999 233 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 IGF2P01344 180 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 IL2RGP31785 369 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 ALDH3B1P43353 468 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 GZMMP51124 257 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 DAP3P51398 398 aaKnown RBP9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 CRYBA2P53672 197 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 CDH15P55291 814 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 CLRN1P58418 232 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 MRPS11P82912 194 aaKnown RBP9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 SLC36A2Q495M3 483 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 TMEM53Q6P2H8 277 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 ERICH5Q6P6B1 374 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 LRFN4Q6PJG9 635 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 CARM1Q86X55 608 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 ZNF584Q8IVC4 421 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 SKA3Q8IX90 412 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 LRRC17Q8N6Y2 441 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 SLC30A7Q8NEW0 376 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 C1orf159Q96HA4 380 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 SEPHS2Q99611 448 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 PRSS27Q9BQR3 290 aa9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 STX18Q9P2W9 335 aaKnown RBP9.93□□□□□ -0.82
SQSTM1-203ENST00000422245 FXYD1O00168 92 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 FBP2O00757 339 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 MGRN1O60291 552 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 SNAP29O95721 258 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 PTHP01270 115 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 IFNA14P01570 189 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 MT-ND1P03886 318 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 QDPRP09417 244 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 PATE4P0C8F1 98 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 NR2C1P13056 603 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 ACHEP22303 614 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 GPR6P46095 362 aaPredicted RBP9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 ZNF84P51523 738 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 TAS2R41P59536 307 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 SELENOVP59797 346 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 RPL18Q07020 188 aaKnown RBP9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 MAD2L1BPQ15013 274 aaPredicted RBP9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 MAPRE2Q15555 327 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 TRIP10Q15642 601 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 HIST3H3Q16695 136 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 TBC1D28Q2M2D7 210 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 RABL3Q5HYI8 236 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 ELFN2Q5R3F8 820 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 RGS7BPQ6MZT1 257 aaPredicted RBP9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 NANOGP8Q6NSW7 305 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 DEF8Q6ZN54 512 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 SLC16A14Q7RTX9 510 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 CALHM3Q86XJ0 350 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 OR4K5Q8NGD3 323 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 FGFBP3Q8TAT2 258 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 RDH5Q92781 318 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 SGTBQ96EQ0 304 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 SH3GL3Q99963 347 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 ECSITQ9BQ95 431 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 TMEM120AQ9BXJ8 343 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 NANOGQ9H9S0 305 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 CDH20Q9HBT6 801 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 MEPEQ9NQ76 525 aaPredicted RBP9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 MYEF2Q9P2K5 600 aaKnown RBP9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 GPR160Q9UJ42 338 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 SH3GLB1Q9Y371 365 aa9.92□□□□□ -0.82
SQSTM1-203ENST00000422245 GMNCA6NCL1 334 aa9.91□□□□□ -0.82
SQSTM1-203ENST00000422245 NPIPB13A6NJU9 1138 aa9.91□□□□□ -0.82
SQSTM1-203ENST00000422245 B4DSR2 109 aa9.91□□□□□ -0.82
SQSTM1-203ENST00000422245 NPIPB4C9JG80 1138 aa9.91□□□□□ -0.82
SQSTM1-203ENST00000422245 LYNX1G3V0Z9 82 aa9.91□□□□□ -0.82
SQSTM1-203ENST00000422245 BLOC1S5-TXNDC5H3BN57 136 aa9.91□□□□□ -0.82
SQSTM1-203ENST00000422245 MRASO14807 208 aa9.91□□□□□ -0.82
SQSTM1-203ENST00000422245 OR7A10O76100 309 aa9.91□□□□□ -0.82
SQSTM1-203ENST00000422245 NPPAP01160 153 aa9.91□□□□□ -0.82
SQSTM1-203ENST00000422245 TFP02787 698 aa9.91□□□□□ -0.82
SQSTM1-203ENST00000422245 HPXP02790 462 aa9.91□□□□□ -0.82
SQSTM1-203ENST00000422245 LYNX1P0DP58 116 aa9.91□□□□□ -0.82
SQSTM1-203ENST00000422245 TROVE2P10155 538 aaKnown RBP eCLIP9.91□□□□□ -0.825e-7■□□□□ 10.5
SQSTM1-203ENST00000422245 SAGP10523 405 aaPredicted RBP9.91□□□□□ -0.82
SQSTM1-203ENST00000422245 THRBP10828 461 aa9.91□□□□□ -0.82
SQSTM1-203ENST00000422245 SRP14P37108 136 aaKnown RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms